GitLab at IIASA

Skip to content
GitLab
Find file Normal view History Permalink
index.html 10.2 KiB
Newer Older
Hugo Scherer's avatar
Improved FarmDynR package with capacity for FADN data and useful functions for results analysis
Hugo Scherer committed
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 
<!DOCTYPE html>
<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1.0"><title>Function reference • FarmDynR</title><!-- jquery --><script src="https://cdnjs.cloudflare.com/ajax/libs/jquery/3.4.1/jquery.min.js" integrity="sha256-CSXorXvZcTkaix6Yvo6HppcZGetbYMGWSFlBw8HfCJo=" crossorigin="anonymous"></script><!-- Bootstrap --><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/3.4.1/css/bootstrap.min.css" integrity="sha256-bZLfwXAP04zRMK2BjiO8iu9pf4FbLqX6zitd+tIvLhE=" crossorigin="anonymous"><script src="https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/3.4.1/js/bootstrap.min.js" integrity="sha256-nuL8/2cJ5NDSSwnKD8VqreErSWHtnEP9E7AySL+1ev4=" crossorigin="anonymous"></script><!-- bootstrap-toc --><link rel="stylesheet" href="../bootstrap-toc.css"><script src="../bootstrap-toc.js"></script><!-- Font Awesome icons --><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/all.min.css" integrity="sha256-mmgLkCYLUQbXn0B1SRqzHar6dCnv9oZFPEC1g1cwlkk=" crossorigin="anonymous"><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/v4-shims.min.css" integrity="sha256-wZjR52fzng1pJHwx4aV2AO3yyTOXrcDW7jBpJtTwVxw=" crossorigin="anonymous"><!-- clipboard.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.6/clipboard.min.js" integrity="sha256-inc5kl9MA1hkeYUt+EC3BhlIgyp/2jDIyBLS6k3UxPI=" crossorigin="anonymous"></script><!-- headroom.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/headroom.min.js" integrity="sha256-AsUX4SJE1+yuDu5+mAVzJbuYNPHj/WroHuZ8Ir/CkE0=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/jQuery.headroom.min.js" integrity="sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4=" crossorigin="anonymous"></script><!-- pkgdown --><link href="../pkgdown.css" rel="stylesheet"><script src="../pkgdown.js"></script><meta property="og:title" content="Function reference"><!-- mathjax --><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity="sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin="anonymous"></script><!--[if lt IE 9]>
<script src="https://oss.maxcdn.com/html5shiv/3.7.3/html5shiv.min.js"></script>
<script src="https://oss.maxcdn.com/respond/1.4.2/respond.min.js"></script>
<![endif]--></head><body data-spy="scroll" data-target="#toc">
    

    <div class="container template-reference-index">
      <header><div class="navbar navbar-default navbar-fixed-top" role="navigation">
  <div class="container">
    <div class="navbar-header">
      <button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-target="#navbar" aria-expanded="false">
        <span class="sr-only">Toggle navigation</span>
        <span class="icon-bar"></span>
        <span class="icon-bar"></span>
        <span class="icon-bar"></span>
      </button>
      <span class="navbar-brand">
        <a class="navbar-link" href="../index.html">FarmDynR</a>
Hugo Scherer's avatar
Fixed typos, added imports, updated README and DESCRIPTION  
Hugo Scherer committed
20 
        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="">0.5.0</span>
Hugo Scherer's avatar
Improved FarmDynR package with capacity for FADN data and useful functions for results analysis
Hugo Scherer committed
21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 
      </span>
    </div>

    <div id="navbar" class="navbar-collapse collapse">
      <ul class="nav navbar-nav"><li>
  <a href="../reference/index.html">Reference</a>
</li>
<li>
  <a href="../news/index.html">Changelog</a>
</li>
      </ul><ul class="nav navbar-nav navbar-right"></ul></div><!--/.nav-collapse -->
  </div><!--/.container -->
</div><!--/.navbar -->

      

      </header><div class="row">
  <div class="contents col-md-9">
    <div class="page-header">
      <h1>Reference</h1>
    </div>

    <table class="ref-index"><colgroup><col class="alias"><col class="title"></colgroup><tbody><tr><th colspan="2">
          <h2 id="all-functions">All functions <a href="#all-functions" class="anchor" aria-hidden="true"></a></h2>
          <p class="section-desc"></p>
        </th>
      </tr></tbody><tbody><tr><td>
          <p><code><a href="abs_diff.html">abs_diff()</a></code> </p>
        </td>
        <td><p>Calculates the absolute difference of the reference and the scenarios in a new column</p></td>
      </tr><tr><td>
          <p><code><a href="fadn2fd.html">fadn2fd()</a></code> </p>
        </td>
        <td><p>`fadn2fd()` imports the FADN data from the csv files</p></td>
      </tr><tr><td>
          <p><code><a href="fd_desc.html">fd_desc()</a></code> </p>
        </td>
        <td><p>`fd_desc()` calculates the descriptive statistics of the farm data</p></td>
      </tr><tr><td>
          <p><code><a href="first_match_col.html">first_match_col()</a></code> </p>
        </td>
        <td><p>`first_match_col()` finds the first matching column in a dataframe</p></td>
      </tr><tr><td>
          <p><code><a href="gdxbinwider.html">gdxbinwider()</a></code> <code><a href="gdxbinwider.html">gdxbinwider()</a></code> </p>
        </td>
        <td><p>Join BIN data together, make joined dataset wider, and group by a mapping</p></td>
      </tr><tr><td>
          <p><code><a href="gdxload.html">gdxload()</a></code> <code><a href="gdxload.html">gdxload()</a></code> </p>
        </td>
        <td><p>Load from GDX</p></td>
      </tr><tr><td>
          <p><code><a href="gdxreshape.html">gdxreshape()</a></code> <code><a href="gdxreshape.html">gdxreshape()</a></code> </p>
        </td>
        <td><p>Reshape from wide to long and save to GDX</p></td>
      </tr><tr><td>
          <p><code><a href="groupstats.html">groupstats()</a></code> <code><a href="groupstats.html">groupstats()</a></code> </p>
        </td>
        <td><p>Generate descriptive statistics and save to GDX</p></td>
      </tr><tr><td>
          <p><code><a href="is.nan.data.frame.html">is.nan(<i>&lt;data.frame&gt;</i>)</a></code> </p>
        </td>
        <td><p>`is.nan.data.frame()` checks if there are any NaNs in a dataframe (`is.nan()` does not work for dfs)</p></td>
      </tr><tr><td>
          <p><code><a href="load_dumps.html">load_dumps()</a></code> </p>
        </td>
        <td><p>`load_dumps()` loads the p_res from the dump gdx files</p></td>
      </tr><tr><td>
          <p><code><a href="load_dump_marg.html">load_dump_marg()</a></code> </p>
        </td>
        <td><p>`load_dump_marg()` loads any marginal from the dump gdx files</p></td>
      </tr><tr><td>
          <p><code><a href="load_dump_par.html">load_dump_par()</a></code> </p>
        </td>
        <td><p>`load_dump_par()` loads any parameter from the dump gdx files</p></td>
      </tr><tr><td>
          <p><code><a href="load_dump_scalar.html">load_dump_scalar()</a></code> </p>
        </td>
        <td><p>`load_dump_scalar()` loads any scalar from the dump gdx files</p></td>
      </tr><tr><td>
          <p><code><a href="Modes.html">Modes()</a></code> <code><a href="Modes.html">Modes()</a></code> </p>
        </td>
        <td><p>Retrieve mode of vector</p></td>
      </tr><tr><td>
          <p><code><a href="replace_first_match_col.html">replace_first_match_col()</a></code> </p>
        </td>
        <td><p>`replace_first_match_col()` replaces the name of the column in `first_match_col()` with what the user inputs</p></td>
      </tr><tr><td>
          <p><code><a href="rgdx.var.html">rgdx.var()</a></code> </p>
        </td>
        <td><p>Improved function to load variables from gdx files (from Renger in GAMSWorld forum)</p></td>
      </tr><tr><td>
          <p><code><a href="rm_lown.html">rm_lown()</a></code> </p>
        </td>
        <td><p>`rm_lown()` removes aggregated farms with less than 15 farms for reporting</p></td>
      </tr><tr><td>
          <p><code><a href="runFarmDynfromBatch.html">runFarmDynfromBatch()</a></code> <code><a href="runFarmDynfromBatch.html">runFarmDynfromBatch()</a></code> </p>
        </td>
        <td><p>Execute FarmDyn</p></td>
      </tr><tr><td>
          <p><code><a href="scen_analysis.html">scen_analysis()</a></code> </p>
        </td>
        <td><p>Data analysis function for repeated tasks
This loads p_res from different scenarios</p></td>
      </tr><tr><td>
          <p><code><a href="scen_diff.html">scen_diff()</a></code> </p>
        </td>
        <td><p>Calculates the relative difference of the reference and the scenarios in a new column</p></td>
      </tr><tr><td>
          <p><code><a href="str_line_replace.html">str_line_replace()</a></code> <code><a href="str_line_replace.html">str_firstLine_replace()</a></code> <code><a href="str_line_replace.html">str_lastLine_replace()</a></code> <code><a href="str_line_replace.html">str_line_replace()</a></code> <code><a href="str_line_replace.html">str_firstLine_replace()</a></code> <code><a href="str_line_replace.html">str_lastLine_replace()</a></code> </p>
        </td>
        <td><p>Replace first or last line in strings</p></td>
      </tr><tr><td>
          <p><code><a href="updateFarmData.html">updateFarmData()</a></code> <code><a href="updateFarmData.html">updateFarmData()</a></code> </p>
        </td>
        <td><p>Reshape from wide to long and save to GDX
Create sample farms</p></td>
      </tr><tr><td>
          <p><code><a href="vars_dump.html">vars_dump()</a></code> </p>
        </td>
        <td><p>Load variables from dump gdx files and return a data.table</p></td>
      </tr><tr><td>
          <p><code><a href="writeBatch.html">writeBatch()</a></code> <code><a href="writeBatch.html">writeBatch()</a></code> </p>
        </td>
        <td><p>Write batch file for batch file execution mode in FarmDyn</p></td>
      </tr></tbody></table></div>

  <div class="col-md-3 hidden-xs hidden-sm" id="pkgdown-sidebar">
    <nav id="toc" data-toggle="toc" class="sticky-top"><h2 data-toc-skip>Contents</h2>
    </nav></div>
</div>


      <footer><div class="copyright">
  <p></p><p>Developed by Hugo Scherer.</p>
</div>

<div class="pkgdown">
  <p></p><p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.7.</p>
</div>

      </footer></div>

  


  

  </body></html>

GitLab at IIASA