GitLab at IIASA

Skip to content
GitLab
Find file Normal view History Permalink
updateFarmData.html 9.86 KiB
Newer Older
Hugo Scherer's avatar
Improved FarmDynR package with capacity for FADN data and useful functions for results analysis
Hugo Scherer committed
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 
<!DOCTYPE html>
<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1.0"><title>Reshape from wide to long and save to GDX
Create sample farms — updateFarmData • FarmDynR</title><!-- jquery --><script src="https://cdnjs.cloudflare.com/ajax/libs/jquery/3.4.1/jquery.min.js" integrity="sha256-CSXorXvZcTkaix6Yvo6HppcZGetbYMGWSFlBw8HfCJo=" crossorigin="anonymous"></script><!-- Bootstrap --><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/3.4.1/css/bootstrap.min.css" integrity="sha256-bZLfwXAP04zRMK2BjiO8iu9pf4FbLqX6zitd+tIvLhE=" crossorigin="anonymous"><script src="https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/3.4.1/js/bootstrap.min.js" integrity="sha256-nuL8/2cJ5NDSSwnKD8VqreErSWHtnEP9E7AySL+1ev4=" crossorigin="anonymous"></script><!-- bootstrap-toc --><link rel="stylesheet" href="../bootstrap-toc.css"><script src="../bootstrap-toc.js"></script><!-- Font Awesome icons --><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/all.min.css" integrity="sha256-mmgLkCYLUQbXn0B1SRqzHar6dCnv9oZFPEC1g1cwlkk=" crossorigin="anonymous"><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/v4-shims.min.css" integrity="sha256-wZjR52fzng1pJHwx4aV2AO3yyTOXrcDW7jBpJtTwVxw=" crossorigin="anonymous"><!-- clipboard.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.6/clipboard.min.js" integrity="sha256-inc5kl9MA1hkeYUt+EC3BhlIgyp/2jDIyBLS6k3UxPI=" crossorigin="anonymous"></script><!-- headroom.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/headroom.min.js" integrity="sha256-AsUX4SJE1+yuDu5+mAVzJbuYNPHj/WroHuZ8Ir/CkE0=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/jQuery.headroom.min.js" integrity="sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4=" crossorigin="anonymous"></script><!-- pkgdown --><link href="../pkgdown.css" rel="stylesheet"><script src="../pkgdown.js"></script><meta property="og:title" content="Reshape from wide to long and save to GDX
Create sample farms — updateFarmData"><meta property="og:description" content="`updateFarmData()` creates sample farms by aggregating data based on the weighted mean and the selected mapping for use in FarmDyn.
For non-numerical globals, it summarises based on the mode using the `Modes()` function. When `writegdx` is `TRUE`, it writes the GDX in the format 'farmData_(mapping).gdx'.
`updateFarmData()` creates sample farms by aggregating data based on the weighted mean and the selected mapping for use in FarmDyn.
For non-numerical globals, it summarises based on the mode using the `Modes()` function. When `writegdx` is `TRUE`, it writes the GDX in the format 'farmData_(mapping).gdx'."><!-- mathjax --><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity="sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin="anonymous"></script><!--[if lt IE 9]>
<script src="https://oss.maxcdn.com/html5shiv/3.7.3/html5shiv.min.js"></script>
<script src="https://oss.maxcdn.com/respond/1.4.2/respond.min.js"></script>
<![endif]--></head><body data-spy="scroll" data-target="#toc">
    

    <div class="container template-reference-topic">
      <header><div class="navbar navbar-default navbar-fixed-top" role="navigation">
  <div class="container">
    <div class="navbar-header">
      <button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-target="#navbar" aria-expanded="false">
        <span class="sr-only">Toggle navigation</span>
        <span class="icon-bar"></span>
        <span class="icon-bar"></span>
        <span class="icon-bar"></span>
      </button>
      <span class="navbar-brand">
        <a class="navbar-link" href="../index.html">FarmDynR</a>
        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="">0.2.0</span>
      </span>
    </div>

    <div id="navbar" class="navbar-collapse collapse">
      <ul class="nav navbar-nav"><li>
  <a href="../reference/index.html">Reference</a>
</li>
<li>
  <a href="../news/index.html">Changelog</a>
</li>
      </ul><ul class="nav navbar-nav navbar-right"></ul></div><!--/.nav-collapse -->
  </div><!--/.container -->
</div><!--/.navbar -->

      

      </header><div class="row">
  <div class="col-md-9 contents">
    <div class="page-header">
    <h1>Reshape from wide to long and save to GDX
Create sample farms</h1>
    
    <div class="hidden name"><code>updateFarmData.Rd</code></div>
    </div>

    <div class="ref-description">
    <p>`updateFarmData()` creates sample farms by aggregating data based on the weighted mean and the selected mapping for use in FarmDyn.
For non-numerical globals, it summarises based on the mode using the `Modes()` function. When `writegdx` is `TRUE`, it writes the GDX in the format 'farmData_(mapping).gdx'.</p>
<p>`updateFarmData()` creates sample farms by aggregating data based on the weighted mean and the selected mapping for use in FarmDyn.
For non-numerical globals, it summarises based on the mode using the `Modes()` function. When `writegdx` is `TRUE`, it writes the GDX in the format 'farmData_(mapping).gdx'.</p>
    </div>

    <div id="ref-usage">
    <div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">updateFarmData</span><span class="op">(</span></span>
<span>  <span class="va">filename</span>,</span>
<span>  <span class="va">BINDir</span>,</span>
<span>  <span class="va">gdxmap</span>,</span>
<span>  <span class="va">mapping</span>,</span>
<span>  writegdx <span class="op">=</span> <span class="cn">TRUE</span>,</span>
<span>  cptcoeffs <span class="op">=</span> <span class="cn">FALSE</span>,</span>
<span>  farmchars <span class="op">=</span> <span class="cn">NULL</span>,</span>
<span>  cptcoeffsxl <span class="op">=</span> <span class="cn">NULL</span></span>
<span><span class="op">)</span></span>
<span></span>
<span><span class="fu">updateFarmData</span><span class="op">(</span></span>
<span>  <span class="va">filename</span>,</span>
<span>  <span class="va">BINDir</span>,</span>
<span>  <span class="va">gdxmap</span>,</span>
<span>  <span class="va">mapping</span>,</span>
<span>  writegdx <span class="op">=</span> <span class="cn">TRUE</span>,</span>
<span>  cptcoeffs <span class="op">=</span> <span class="cn">FALSE</span>,</span>
<span>  farmchars <span class="op">=</span> <span class="cn">NULL</span>,</span>
<span>  cptcoeffsxl <span class="op">=</span> <span class="cn">NULL</span></span>
<span><span class="op">)</span></span></code></pre></div>
    </div>

    <div id="arguments">
    <h2>Arguments</h2>
    <dl><dt>filename</dt>
<dd><p>Name of the GDX file with BIN data and mappings.</p></dd>


<dt>BINDir</dt>
<dd><p>Directory where the FADN data is located.</p></dd>


<dt>gdxmap</dt>
<dd><p>Name of the set in the GDX file that contains the mapping (e.g. Regs2BINID)</p></dd>


<dt>mapping</dt>
<dd><p>Column name of the characteristic/variable to be grouped by (e.g. "Regions" or "Regs")</p></dd>


<dt>writegdx</dt>
<dd><p>Logical. If `TRUE`, it writes a GDX with the descriptive statistics.</p></dd>


<dt>cptcoeffs</dt>
<dd><p>Logical. When this is set to `TRUE` it calculates farm-specific parameters based on CPT coefficients</p></dd>


<dt>farmchars</dt>
<dd><p>GDX file containing farm characteristics</p></dd>


<dt>cptcoeffsxl</dt>
<dd><p>Location of the CPT coefficients excel file</p></dd>

</dl></div>
    <div id="value">
    <h2>Value</h2>
    

<p>A tibble `tbl_df`.</p>


<p>A tibble `tbl_df`.</p>
    </div>
    <div id="see-also">
    <h2>See also</h2>
    <div class="dont-index">
<ul><li><p><code><a href="gdxbinwider.html">gdxbinwider</a></code>Widens BIN data directly from GDX</p></li>
<li><p><code><a href="gdxreshape.html">gdxreshape</a></code>Lengthens data and saves to GDX</p></li>
<li><p><code><a href="https://rdrr.io/pkg/gdxrrw/man/wgdx.html" class="external-link">wgdx</a></code>Write R data to GDX</p></li>
<li><p><code><a href="https://rdrr.io/pkg/gdxrrw/man/wgdx.html" class="external-link">wgdx.lst</a></code>Write multiple symbols to GDX</p></li>
<li><p><code><a href="https://dplyr.tidyverse.org/reference/summarise.html" class="external-link">summarise</a></code>Make dataframes longer</p></li>
<li><p><code>weighted.mean]</code>Calculates weighted mean</p></li>
</ul><ul><li><p><code><a href="gdxbinwider.html">gdxbinwider</a></code>Widens BIN data directly from GDX</p></li>
<li><p><code><a href="gdxreshape.html">gdxreshape</a></code>Lengthens data and saves to GDX</p></li>
<li><p><code><a href="https://rdrr.io/pkg/gdxrrw/man/wgdx.html" class="external-link">wgdx</a></code>Write R data to GDX</p></li>
<li><p><code><a href="https://rdrr.io/pkg/gdxrrw/man/wgdx.html" class="external-link">wgdx.lst</a></code>Write multiple symbols to GDX</p></li>
<li><p><code><a href="https://dplyr.tidyverse.org/reference/summarise.html" class="external-link">summarise</a></code>Make dataframes longer</p></li>
<li><p><code>weighted.mean]</code>Calculates weighted mean</p></li>
</ul></div>
    </div>

    <div id="ref-examples">
    <h2>Examples</h2>
    
    </div>
  </div>
  <div class="col-md-3 hidden-xs hidden-sm" id="pkgdown-sidebar">
    <nav id="toc" data-toggle="toc" class="sticky-top"><h2 data-toc-skip>Contents</h2>
    </nav></div>
</div>


      <footer><div class="copyright">
  <p></p><p>Developed by Hugo Scherer.</p>
</div>

<div class="pkgdown">
  <p></p><p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.7.</p>
</div>

      </footer></div>

  


  

  </body></html>

GitLab at IIASA