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      <h1>Reference</h1>
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    <table class="ref-index"><colgroup><col class="alias"><col class="title"></colgroup><tbody><tr><th colspan="2">
          <h2 id="all-functions">All functions <a href="#all-functions" class="anchor" aria-hidden="true"></a></h2>
          <p class="section-desc"></p>
        </th>
      </tr></tbody><tbody><tr><td>
          <p><code><a href="abs_diff.html">abs_diff()</a></code> </p>
        </td>
        <td><p>Calculates the absolute difference of the reference and the scenarios in a new column</p></td>
      </tr><tr><td>
          <p><code><a href="fadn2fd.html">fadn2fd()</a></code> </p>
        </td>
        <td><p>`fadn2fd()` imports the FADN data from the csv files</p></td>
      </tr><tr><td>
          <p><code><a href="fd_desc.html">fd_desc()</a></code> </p>
        </td>
        <td><p>`fd_desc()` calculates the descriptive statistics of the farm data</p></td>
      </tr><tr><td>
          <p><code><a href="first_match_col.html">first_match_col()</a></code> </p>
        </td>
        <td><p>`first_match_col()` finds the first matching column in a dataframe</p></td>
      </tr><tr><td>
          <p><code><a href="gdxbinwider.html">gdxbinwider()</a></code> <code><a href="gdxbinwider.html">gdxbinwider()</a></code> </p>
        </td>
        <td><p>Join BIN data together, make joined dataset wider, and group by a mapping</p></td>
      </tr><tr><td>
          <p><code><a href="gdxload.html">gdxload()</a></code> <code><a href="gdxload.html">gdxload()</a></code> </p>
        </td>
        <td><p>Load from GDX</p></td>
      </tr><tr><td>
          <p><code><a href="gdxreshape.html">gdxreshape()</a></code> <code><a href="gdxreshape.html">gdxreshape()</a></code> </p>
        </td>
        <td><p>Reshape from wide to long and save to GDX</p></td>
      </tr><tr><td>
          <p><code><a href="groupstats.html">groupstats()</a></code> <code><a href="groupstats.html">groupstats()</a></code> </p>
        </td>
        <td><p>Generate descriptive statistics and save to GDX</p></td>
      </tr><tr><td>
          <p><code><a href="is.nan.data.frame.html">is.nan(<i>&lt;data.frame&gt;</i>)</a></code> </p>
        </td>
        <td><p>`is.nan.data.frame()` checks if there are any NaNs in a dataframe (`is.nan()` does not work for dfs)</p></td>
      </tr><tr><td>
          <p><code><a href="load_dumps.html">load_dumps()</a></code> </p>
        </td>
        <td><p>`load_dumps()` loads the p_res from the dump gdx files</p></td>
      </tr><tr><td>
          <p><code><a href="load_dump_marg.html">load_dump_marg()</a></code> </p>
        </td>
        <td><p>`load_dump_marg()` loads any marginal from the dump gdx files</p></td>
      </tr><tr><td>
          <p><code><a href="load_dump_par.html">load_dump_par()</a></code> </p>
        </td>
        <td><p>`load_dump_par()` loads any parameter from the dump gdx files</p></td>
      </tr><tr><td>
          <p><code><a href="load_dump_scalar.html">load_dump_scalar()</a></code> </p>
        </td>
        <td><p>`load_dump_scalar()` loads any scalar from the dump gdx files</p></td>
      </tr><tr><td>
          <p><code><a href="Modes.html">Modes()</a></code> <code><a href="Modes.html">Modes()</a></code> </p>
        </td>
        <td><p>Retrieve mode of vector</p></td>
      </tr><tr><td>
          <p><code><a href="replace_first_match_col.html">replace_first_match_col()</a></code> </p>
        </td>
        <td><p>`replace_first_match_col()` replaces the name of the column in `first_match_col()` with what the user inputs</p></td>
      </tr><tr><td>
          <p><code><a href="rgdx.var.html">rgdx.var()</a></code> </p>
        </td>
        <td><p>Improved function to load variables from gdx files (from Renger in GAMSWorld forum)</p></td>
      </tr><tr><td>
          <p><code><a href="rm_lown.html">rm_lown()</a></code> </p>
        </td>
        <td><p>`rm_lown()` removes aggregated farms with less than 15 farms for reporting</p></td>
      </tr><tr><td>
          <p><code><a href="runFarmDynfromBatch.html">runFarmDynfromBatch()</a></code> <code><a href="runFarmDynfromBatch.html">runFarmDynfromBatch()</a></code> </p>
        </td>
        <td><p>Execute FarmDyn</p></td>
      </tr><tr><td>
          <p><code><a href="scen_analysis.html">scen_analysis()</a></code> </p>
        </td>
        <td><p>Data analysis function for repeated tasks
This loads p_res from different scenarios</p></td>
      </tr><tr><td>
          <p><code><a href="scen_diff.html">scen_diff()</a></code> </p>
        </td>
        <td><p>Calculates the relative difference of the reference and the scenarios in a new column</p></td>
      </tr><tr><td>
          <p><code><a href="str_line_replace.html">str_line_replace()</a></code> <code><a href="str_line_replace.html">str_firstLine_replace()</a></code> <code><a href="str_line_replace.html">str_lastLine_replace()</a></code> <code><a href="str_line_replace.html">str_line_replace()</a></code> <code><a href="str_line_replace.html">str_firstLine_replace()</a></code> <code><a href="str_line_replace.html">str_lastLine_replace()</a></code> </p>
        </td>
        <td><p>Replace first or last line in strings</p></td>
      </tr><tr><td>
          <p><code><a href="updateFarmData.html">updateFarmData()</a></code> <code><a href="updateFarmData.html">updateFarmData()</a></code> </p>
        </td>
        <td><p>Reshape from wide to long and save to GDX
Create sample farms</p></td>
      </tr><tr><td>
          <p><code><a href="vars_dump.html">vars_dump()</a></code> </p>
        </td>
        <td><p>Load variables from dump gdx files and return a data.table</p></td>
      </tr><tr><td>
          <p><code><a href="writeBatch.html">writeBatch()</a></code> <code><a href="writeBatch.html">writeBatch()</a></code> </p>
        </td>
        <td><p>Write batch file for batch file execution mode in FarmDyn</p></td>
      </tr></tbody></table></div>

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