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This function returns the mode of a vector. If the vector contains a character or factor, the most common character/factor is returned. Numbers written as characters will be compatible with non-character numbers (i.e. doubles/numeric), but the function returns a character."><!-- mathjax --><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity="sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin="anonymous"></script><!--[if lt IE 9]>
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<h1>Retrieve mode of vector</h1>
<div class="hidden name"><code>Modes.Rd</code></div>
</div>
<div class="ref-description">
<p>This function returns the mode of a vector. If the vector contains a character or factor, the most common character/factor is returned. Numbers written as characters will be compatible with non-character numbers (i.e. doubles/numeric), but the function returns a character.</p>
<p>This function returns the mode of a vector. If the vector contains a character or factor, the most common character/factor is returned. Numbers written as characters will be compatible with non-character numbers (i.e. doubles/numeric), but the function returns a character.</p>
</div>
<div id="ref-usage">
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">Modes</span><span class="op">(</span><span class="va">x</span><span class="op">)</span></span>
<span></span>
<span><span class="fu">Modes</span><span class="op">(</span><span class="va">x</span><span class="op">)</span></span></code></pre></div>
</div>
<div id="arguments">
<h2>Arguments</h2>
<dl><dt>x</dt>
<dd><p>vector from which to retrieve the mode from.</p></dd>
</dl></div>
<div id="value">
<h2>Value</h2>
<p>same class as 'x'.</p>
<p>same class as 'x'.</p>
</div>
<div id="see-also">
<h2>See also</h2>
<div class="dont-index"><p>[tabulate()]</p>
<p>[tabulate()]</p></div>
</div>
<div id="ref-examples">
<h2>Examples</h2>
<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu">Modes</span><span class="op">(</span>x <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="fl">1</span>, <span class="fl">1</span>, <span class="fl">3</span>, <span class="fl">0</span>, <span class="fl">2</span>, <span class="fl">4</span>, <span class="fl">2</span>, <span class="fl">1</span>, <span class="fl">5</span>, <span class="fl">2</span>, <span class="fl">1</span><span class="op">)</span><span class="op">)</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] 1</span>
<span class="r-in"><span><span class="fu">Modes</span><span class="op">(</span>x <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">'a'</span>,<span class="st">'b'</span>, <span class="st">'c'</span>, <span class="st">'a'</span>, <span class="st">'c'</span>, <span class="st">'a'</span><span class="op">)</span><span class="op">)</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] "a"</span>
<span class="r-in"><span><span class="fu">Modes</span><span class="op">(</span>x <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">'a'</span>, <span class="fl">2</span>, <span class="st">'x'</span>, <span class="fl">7895</span>, <span class="fl">1</span>, <span class="st">'2'</span>, <span class="st">'t'</span>, <span class="fl">2</span>, <span class="fl">1</span><span class="op">)</span><span class="op">)</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] "2"</span>
<span class="r-in"><span><span class="fu">Modes</span><span class="op">(</span>x <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="fl">1</span>, <span class="fl">1</span>, <span class="fl">3</span>, <span class="fl">0</span>, <span class="fl">2</span>, <span class="fl">4</span>, <span class="fl">2</span>, <span class="fl">1</span>, <span class="fl">5</span>, <span class="fl">2</span>, <span class="fl">1</span><span class="op">)</span><span class="op">)</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] 1</span>
<span class="r-in"><span><span class="fu">Modes</span><span class="op">(</span>x <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">'a'</span>,<span class="st">'b'</span>, <span class="st">'c'</span>, <span class="st">'a'</span>, <span class="st">'c'</span>, <span class="st">'a'</span><span class="op">)</span><span class="op">)</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] "a"</span>
<span class="r-in"><span><span class="fu">Modes</span><span class="op">(</span>x <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">'a'</span>, <span class="fl">2</span>, <span class="st">'x'</span>, <span class="fl">7895</span>, <span class="fl">1</span>, <span class="st">'2'</span>, <span class="st">'t'</span>, <span class="fl">2</span>, <span class="fl">1</span><span class="op">)</span><span class="op">)</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] "2"</span>
</code></pre></div>
</div>
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<h1>Calculates the absolute difference of the reference and the scenarios in a new column</h1>
<div class="hidden name"><code>abs_diff.Rd</code></div>
</div>
<div class="ref-description">
<p>Calculates the absolute difference of the reference and the scenarios in a new column</p>
</div>
<div id="ref-usage">
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">abs_diff</span><span class="op">(</span><span class="va">data</span>, <span class="va">vars_to_diff</span><span class="op">)</span></span></code></pre></div>
</div>
<div id="arguments">
<h2>Arguments</h2>
<dl><dt>data</dt>
<dd><p>A dataframe</p></dd>
<dt>vars_to_diff</dt>
<dd><p>A vector with the names of the variables to calculate the difference</p></dd>
</dl></div>
<div id="value">
<h2>Value</h2>
<p>A dataframe with the new columns</p>
</div>
</div>
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<h1>`fadn2fd()` imports the FADN data from the csv files</h1>
<div class="hidden name"><code>fadn2fd.Rd</code></div>
</div>
<div class="ref-description">
<p>`fadn2fd()` imports the FADN data from the csv files</p>
</div>
<div id="ref-usage">
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">fadn2fd</span><span class="op">(</span></span>
<span> <span class="va">fadn_data</span>,</span>
<span> <span class="va">mapping</span>,</span>
<span> farmbranch <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"arable"</span>, <span class="st">"dairy"</span><span class="op">)</span>,</span>
<span> save_gdx <span class="op">=</span> <span class="cn">FALSE</span></span>
<span><span class="op">)</span></span></code></pre></div>
</div>
<div id="arguments">
<h2>Arguments</h2>
<dl><dt>fadn_data</dt>
<dd><p>FADN</p></dd>
<dt>mapping</dt>
<dd><p>A vector with the names of the columns to be mapped</p></dd>
<dt>farmbranch</dt>
<dd><p>Either arable or dairy</p></dd>
<dt>save_gdx</dt>
<dd><p>Logical. If TRUE, it saves to gdx files</p></dd>
</dl></div>
<div id="value">
<h2>Value</h2>
<p>A list of dataframes with the FADN data</p>
</div>
</div>
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<h1>`fd_desc()` calculates the descriptive statistics of the farm data</h1>
<div class="hidden name"><code>fd_desc.Rd</code></div>
</div>
<div class="ref-description">
<p>`fd_desc()` calculates the descriptive statistics of the farm data</p>
</div>
<div id="ref-usage">
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">fd_desc</span><span class="op">(</span><span class="va">farm_data</span>, type <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"arable"</span>, <span class="st">"dairy"</span><span class="op">)</span>, csv <span class="op">=</span> <span class="cn">FALSE</span>, dir <span class="op">=</span> <span class="cn">NULL</span><span class="op">)</span></span></code></pre></div>
</div>
<div id="arguments">
<h2>Arguments</h2>
<dl><dt>farm_data</dt>
<dd><p>A dataframe with the p_farmData</p></dd>
<dt>type</dt>
<dd><p>Type of farm data to analyse (Dairy or Arable farms)</p></dd>
<dt>csv</dt>
<dd><p>Logical. If TRUE, it saves the results as a csv</p></dd>
</dl></div>
<div id="value">
<h2>Value</h2>
<p>A dataframe with the descriptive statistics</p>
</div>
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<h1>`first_match_col()` finds the first matching column in a dataframe</h1>
<div class="hidden name"><code>first_match_col.Rd</code></div>
</div>
<div class="ref-description">
<p>`first_match_col()` finds the first matching column in a dataframe</p>
</div>
<div id="ref-usage">
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">first_match_col</span><span class="op">(</span><span class="va">x</span>, <span class="va">pattern</span>, how <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"all"</span>, <span class="st">"any"</span><span class="op">)</span><span class="op">)</span></span></code></pre></div>
</div>
<div id="arguments">
<h2>Arguments</h2>
<dl><dt>x</dt>
<dd><p>A dataframe</p></dd>
<dt>pattern</dt>
<dd><p>A pattern to match</p></dd>
<dt>how</dt>
<dd><p>How to match the pattern (all or any)</p></dd>
</dl></div>
<div id="value">
<h2>Value</h2>
<p>The name of the first matching column</p>
</div>
<div id="ref-examples">
<h2>Examples</h2>
<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="va">data</span> <span class="op">&lt;-</span> <span class="fu"><a href="https://rdrr.io/r/base/data.frame.html" class="external-link">data.frame</a></span><span class="op">(</span>a <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"a"</span>, <span class="st">"b"</span>, <span class="st">"c"</span><span class="op">)</span>, b <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"a"</span>, <span class="st">" "</span>, <span class="st">"c"</span><span class="op">)</span>, c <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"a"</span>, <span class="st">"b"</span>, <span class="st">"1"</span><span class="op">)</span><span class="op">)</span></span></span>
<span class="r-in"><span><span class="fu">first_match_col</span><span class="op">(</span><span class="va">data</span>, <span class="st">"\\D"</span>, <span class="st">"all"</span><span class="op">)</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] "a"</span>
<span class="r-in"><span><span class="fu">first_match_col</span><span class="op">(</span><span class="va">data</span>, <span class="st">"\\d"</span>, <span class="st">"any"</span><span class="op">)</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] "c"</span>
</code></pre></div>
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docs/reference/gdxbinwider.html 0 → 100644
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<!DOCTYPE html>
<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1.0"><title>Join BIN data together, make joined dataset wider, and group by a mapping — gdxbinwider • FarmDynR</title><!-- jquery --><script src="https://cdnjs.cloudflare.com/ajax/libs/jquery/3.4.1/jquery.min.js" integrity="sha256-CSXorXvZcTkaix6Yvo6HppcZGetbYMGWSFlBw8HfCJo=" crossorigin="anonymous"></script><!-- Bootstrap --><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/3.4.1/css/bootstrap.min.css" integrity="sha256-bZLfwXAP04zRMK2BjiO8iu9pf4FbLqX6zitd+tIvLhE=" crossorigin="anonymous"><script src="https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/3.4.1/js/bootstrap.min.js" integrity="sha256-nuL8/2cJ5NDSSwnKD8VqreErSWHtnEP9E7AySL+1ev4=" crossorigin="anonymous"></script><!-- bootstrap-toc --><link rel="stylesheet" href="../bootstrap-toc.css"><script src="../bootstrap-toc.js"></script><!-- Font Awesome icons --><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/all.min.css" integrity="sha256-mmgLkCYLUQbXn0B1SRqzHar6dCnv9oZFPEC1g1cwlkk=" crossorigin="anonymous"><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/v4-shims.min.css" integrity="sha256-wZjR52fzng1pJHwx4aV2AO3yyTOXrcDW7jBpJtTwVxw=" crossorigin="anonymous"><!-- clipboard.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.6/clipboard.min.js" integrity="sha256-inc5kl9MA1hkeYUt+EC3BhlIgyp/2jDIyBLS6k3UxPI=" crossorigin="anonymous"></script><!-- headroom.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/headroom.min.js" integrity="sha256-AsUX4SJE1+yuDu5+mAVzJbuYNPHj/WroHuZ8Ir/CkE0=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/jQuery.headroom.min.js" integrity="sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4=" crossorigin="anonymous"></script><!-- pkgdown --><link href="../pkgdown.css" rel="stylesheet"><script src="../pkgdown.js"></script><meta property="og:title" content="Join BIN data together, make joined dataset wider, and group by a mapping — gdxbinwider"><meta property="og:description" content="The `gdxbinwider()` function takes in a GDX file with BIN data as parameters p_farmData_NL and p_farmData2GUI, and a mapping as a set.
Then the data is widened, and the output is a tibble.
The `gdxbinwider()` function takes in a GDX file with BIN data as parameters p_farmData_NL and p_farmData2GUI, and a mapping as a set.
Then the data is widened, and the output is a tibble."><!-- mathjax --><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity="sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin="anonymous"></script><!--[if lt IE 9]>
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<h1>Join BIN data together, make joined dataset wider, and group by a mapping</h1>
<div class="hidden name"><code>gdxbinwider.Rd</code></div>
</div>
<div class="ref-description">
<p>The `gdxbinwider()` function takes in a GDX file with BIN data as parameters p_farmData_NL and p_farmData2GUI, and a mapping as a set.
Then the data is widened, and the output is a tibble.</p>
<p>The `gdxbinwider()` function takes in a GDX file with BIN data as parameters p_farmData_NL and p_farmData2GUI, and a mapping as a set.
Then the data is widened, and the output is a tibble.</p>
</div>
<div id="ref-usage">
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">gdxbinwider</span><span class="op">(</span><span class="va">filename</span>, <span class="va">BINDir</span>, <span class="va">gdxmap</span>, <span class="va">mapping</span><span class="op">)</span></span>
<span></span>
<span><span class="fu">gdxbinwider</span><span class="op">(</span><span class="va">filename</span>, <span class="va">BINDir</span>, <span class="va">gdxmap</span>, <span class="va">mapping</span><span class="op">)</span></span></code></pre></div>
</div>
<div id="arguments">
<h2>Arguments</h2>
<dl><dt>filename</dt>
<dd><p>Name of the GDX file with BIN data and mappings.</p></dd>
<dt>BINDir</dt>
<dd><p>Directory where the FADN data is located.</p></dd>
<dt>gdxmap</dt>
<dd><p>Name of the set in the GDX file that contains the mapping (e.g. Regs2BINID)</p></dd>
<dt>mapping</dt>
<dd><p>Column name of the characteristic/variable to be grouped by (e.g. "Regions" or "Regs")</p></dd>
</dl></div>
<div id="value">
<h2>Value</h2>
<p>A tibble `tbl_df`.</p>
<p>A tibble `tbl_df`.</p>
</div>
<div id="see-also">
<h2>See also</h2>
<div class="dont-index">
<ul><li><p><code><a href="https://rdrr.io/pkg/gdxrrw/man/rgdx.html" class="external-link">rgdx.param</a></code>Load GDX parameters</p></li>
<li><p><code><a href="https://rdrr.io/pkg/gdxrrw/man/rgdx.html" class="external-link">rgdx.set</a></code>Load GDX sets</p></li>
<li><p><code><a href="https://tidyr.tidyverse.org/reference/pivot_wider.html" class="external-link">pivot_wider</a></code>Make dataframes wider</p></li>
</ul><ul><li><p><code><a href="https://rdrr.io/pkg/gdxrrw/man/rgdx.html" class="external-link">rgdx.param</a></code>Load GDX parameters</p></li>
<li><p><code><a href="https://rdrr.io/pkg/gdxrrw/man/rgdx.html" class="external-link">rgdx.set</a></code>Load GDX sets</p></li>
<li><p><code><a href="https://tidyr.tidyverse.org/reference/pivot_wider.html" class="external-link">pivot_wider</a></code>Make dataframes wider</p></li>
</ul></div>
</div>
<div id="ref-examples">
<h2>Examples</h2>
<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="va">BINDir</span> <span class="op">&lt;-</span> <span class="st">"inst/extdata/GAMS"</span></span></span>
<span class="r-in"><span><span class="va">datafile</span> <span class="op">&lt;-</span> <span class="st">'FarmDynRexampledata.gdx'</span></span></span>
<span class="r-in"><span><span class="fu">gdxbinwider</span><span class="op">(</span><span class="va">datafile</span>, <span class="va">BINDir</span>, <span class="st">'map2binid'</span>, <span class="st">'mapping'</span><span class="op">)</span></span></span>
<span class="r-err co"><span class="r-pr">#&gt;</span> <span class="error">Error in rgdx(gdxName, list(name = symName, compress = compress, ts = ts), squeeze = squeeze, useDomInfo = useDomInfo):</span> GDX file 'inst/extdata/GAMS/FarmDynRexampledata.gdx' not found</span>
<span class="r-in"><span><span class="va">BINDir</span> <span class="op">&lt;-</span> <span class="st">"inst/extdata/GAMS"</span></span></span>
<span class="r-in"><span><span class="va">datafile</span> <span class="op">&lt;-</span> <span class="st">'FarmDynRexampledata.gdx'</span></span></span>
<span class="r-in"><span><span class="fu">gdxbinwider</span><span class="op">(</span><span class="va">datafile</span>, <span class="va">BINDir</span>, <span class="st">'map2binid'</span>, <span class="st">'mapping'</span><span class="op">)</span></span></span>
<span class="r-err co"><span class="r-pr">#&gt;</span> <span class="error">Error in rgdx(gdxName, list(name = symName, compress = compress, ts = ts), squeeze = squeeze, useDomInfo = useDomInfo):</span> GDX file 'inst/extdata/GAMS/FarmDynRexampledata.gdx' not found</span>
</code></pre></div>
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`gdxload()` is a wrapper for gdxrrw::rgdx. It fixes the issue of having all UELs as factor levels for variables for which they do not belong."><!-- mathjax --><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity="sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin="anonymous"></script><!--[if lt IE 9]>
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<h1>Load from GDX</h1>
<div class="hidden name"><code>gdxload.Rd</code></div>
</div>
<div class="ref-description">
<p>`gdxload()` is a wrapper for gdxrrw::rgdx. It fixes the issue of having all UELs as factor levels for variables for which they do not belong.</p>
<p>`gdxload()` is a wrapper for gdxrrw::rgdx. It fixes the issue of having all UELs as factor levels for variables for which they do not belong.</p>
</div>
<div id="ref-usage">
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">gdxload</span><span class="op">(</span></span>
<span> <span class="va">filename</span>,</span>
<span> symbol <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"set"</span>, <span class="st">"param"</span>, <span class="st">"scalar"</span><span class="op">)</span>,</span>
<span> <span class="va">symName</span>,</span>
<span> names <span class="op">=</span> <span class="cn">NULL</span>,</span>
<span> <span class="va">...</span></span>
<span><span class="op">)</span></span>
<span></span>
<span><span class="fu">gdxload</span><span class="op">(</span></span>
<span> <span class="va">filename</span>,</span>
<span> symbol <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"set"</span>, <span class="st">"param"</span>, <span class="st">"scalar"</span><span class="op">)</span>,</span>
<span> <span class="va">symName</span>,</span>
<span> names <span class="op">=</span> <span class="cn">NULL</span>,</span>
<span> <span class="va">...</span></span>
<span><span class="op">)</span></span></code></pre></div>
</div>
<div id="arguments">
<h2>Arguments</h2>
<dl><dt>filename</dt>
<dd><p>Name of the GDX file and its location</p></dd>
<dt>symbol</dt>
<dd><p>The symbol type to be loaded (set, parameter, scalar)</p></dd>
<dt>symName</dt>
<dd><p>The name of the symbol to be loaded</p></dd>
<dt>names</dt>
<dd><p>Column names of the symbol</p></dd>
<dt>...</dt>
<dd><p>Arguments to be passed to gdxrrw::rgdx(...)</p></dd>
</dl></div>
<div id="value">
<h2>Value</h2>
<p>A dataframe</p>
<p>A dataframe</p>
</div>
<div id="see-also">
<h2>See also</h2>
<div class="dont-index"><p>*gdxrrw::rgdx.set()
*gdxrrw::rgdx.param()
*gdxrrw::rgdx.scalar()</p>
<p>*gdxrrw::rgdx.set()
*gdxrrw::rgdx.param()
*gdxrrw::rgdx.scalar()</p></div>
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docs/reference/gdxreshape.html 0 → 100644
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<!DOCTYPE html>
<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1.0"><title>Reshape from wide to long and save to GDX — gdxreshape • FarmDynR</title><!-- jquery --><script src="https://cdnjs.cloudflare.com/ajax/libs/jquery/3.4.1/jquery.min.js" integrity="sha256-CSXorXvZcTkaix6Yvo6HppcZGetbYMGWSFlBw8HfCJo=" crossorigin="anonymous"></script><!-- Bootstrap --><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/3.4.1/css/bootstrap.min.css" integrity="sha256-bZLfwXAP04zRMK2BjiO8iu9pf4FbLqX6zitd+tIvLhE=" crossorigin="anonymous"><script src="https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/3.4.1/js/bootstrap.min.js" integrity="sha256-nuL8/2cJ5NDSSwnKD8VqreErSWHtnEP9E7AySL+1ev4=" crossorigin="anonymous"></script><!-- bootstrap-toc --><link rel="stylesheet" href="../bootstrap-toc.css"><script src="../bootstrap-toc.js"></script><!-- Font Awesome icons --><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/all.min.css" integrity="sha256-mmgLkCYLUQbXn0B1SRqzHar6dCnv9oZFPEC1g1cwlkk=" crossorigin="anonymous"><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/v4-shims.min.css" integrity="sha256-wZjR52fzng1pJHwx4aV2AO3yyTOXrcDW7jBpJtTwVxw=" crossorigin="anonymous"><!-- clipboard.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.6/clipboard.min.js" integrity="sha256-inc5kl9MA1hkeYUt+EC3BhlIgyp/2jDIyBLS6k3UxPI=" crossorigin="anonymous"></script><!-- headroom.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/headroom.min.js" integrity="sha256-AsUX4SJE1+yuDu5+mAVzJbuYNPHj/WroHuZ8Ir/CkE0=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/jQuery.headroom.min.js" integrity="sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4=" crossorigin="anonymous"></script><!-- pkgdown --><link href="../pkgdown.css" rel="stylesheet"><script src="../pkgdown.js"></script><meta property="og:title" content="Reshape from wide to long and save to GDX — gdxreshape"><meta property="og:description" content="`gdxreshape()` formats the data to be saved in GDX into long format. It is imported from the gdxrrw package with a few improvements for performance and usability, since there is a risk of it being removed from the gdxrrw package in the future.
We would like to thank the R GAMS team for this useful function.
`gdxreshape()` formats the data to be saved in GDX into long format. It is imported from the gdxrrw package with a few improvements for performance and usability, since there is a risk of it being removed from the gdxrrw package in the future.
We would like to thank the R GAMS team for this useful function."><!-- mathjax --><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity="sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin="anonymous"></script><!--[if lt IE 9]>
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<h1>Reshape from wide to long and save to GDX</h1>
<div class="hidden name"><code>gdxreshape.Rd</code></div>
</div>
<div class="ref-description">
<p>`gdxreshape()` formats the data to be saved in GDX into long format. It is imported from the gdxrrw package with a few improvements for performance and usability, since there is a risk of it being removed from the gdxrrw package in the future.
We would like to thank the R GAMS team for this useful function.</p>
<p>`gdxreshape()` formats the data to be saved in GDX into long format. It is imported from the gdxrrw package with a few improvements for performance and usability, since there is a risk of it being removed from the gdxrrw package in the future.
We would like to thank the R GAMS team for this useful function.</p>
</div>
<div id="ref-usage">
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">gdxreshape</span><span class="op">(</span></span>
<span> <span class="va">inDF</span>,</span>
<span> <span class="va">symDim</span>,</span>
<span> symName <span class="op">=</span> <span class="cn">NULL</span>,</span>
<span> tName <span class="op">=</span> <span class="st">"time"</span>,</span>
<span> gdxName <span class="op">=</span> <span class="cn">NULL</span>,</span>
<span> setsToo <span class="op">=</span> <span class="cn">TRUE</span>,</span>
<span> order <span class="op">=</span> <span class="cn">NULL</span>,</span>
<span> setNames <span class="op">=</span> <span class="cn">NULL</span></span>
<span><span class="op">)</span></span>
<span></span>
<span><span class="fu">gdxreshape</span><span class="op">(</span></span>
<span> <span class="va">inDF</span>,</span>
<span> <span class="va">symDim</span>,</span>
<span> symName <span class="op">=</span> <span class="cn">NULL</span>,</span>
<span> tName <span class="op">=</span> <span class="st">"time"</span>,</span>
<span> gdxName <span class="op">=</span> <span class="cn">NULL</span>,</span>
<span> setsToo <span class="op">=</span> <span class="cn">TRUE</span>,</span>
<span> order <span class="op">=</span> <span class="cn">NULL</span>,</span>
<span> setNames <span class="op">=</span> <span class="cn">NULL</span></span>
<span><span class="op">)</span></span></code></pre></div>
</div>
<div id="arguments">
<h2>Arguments</h2>
<dl><dt>inDF</dt>
<dd><p>wide dataframe.</p></dd>
<dt>symDim</dt>
<dd><p>wide dataframe.</p></dd>
<dt>symName</dt>
<dd><p>wide dataframe.</p></dd>
<dt>tName</dt>
<dd><p>wide dataframe.</p></dd>
<dt>gdxName</dt>
<dd><p>wide dataframe.</p></dd>
<dt>setsToo</dt>
<dd><p>wide dataframe.</p></dd>
<dt>order</dt>
<dd><p>wide dataframe.</p></dd>
<dt>setNames</dt>
<dd><p>wide dataframe.</p></dd>
</dl></div>
<div id="value">
<h2>Value</h2>
<p>A tibble `tbl_df`.</p>
<p>A tibble `tbl_df`.</p>
</div>
<div id="see-also">
<h2>See also</h2>
<div class="dont-index">
<ul><li><p><code>wgdx]</code>Write R data to GDX</p></li>
<li><p><code>wgdx.lst]</code>Write multiple symbols to GDX</p></li>
<li><p><code>wgdx.reshape]</code>Write multiple symbols to GDX</p></li>
<li><p><code>pivot_longer]</code>Make dataframes longer</p></li>
</ul><ul><li><p><code>wgdx]</code>Write R data to GDX</p></li>
<li><p><code>wgdx.lst]</code>Write multiple symbols to GDX</p></li>
<li><p><code>wgdx.reshape]</code>Write multiple symbols to GDX</p></li>
<li><p><code>pivot_longer]</code>Make dataframes longer</p></li>
</ul></div>
</div>
<div id="ref-examples">
<h2>Examples</h2>
<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="va">BINDir</span> <span class="op">&lt;-</span> <span class="st">"inst/extdata/GAMS"</span></span></span>
<span class="r-in"><span><span class="va">datafile</span> <span class="op">&lt;-</span> <span class="st">'FarmDynRexampledata.gdx'</span></span></span>
<span class="r-in"><span><span class="fu"><a href="gdxbinwider.html">gdxbinwider</a></span><span class="op">(</span><span class="va">datafile</span>, <span class="va">BINDir</span>, <span class="st">'map2binid'</span>, <span class="st">'mapping'</span><span class="op">)</span></span></span>
<span class="r-err co"><span class="r-pr">#&gt;</span> <span class="error">Error in rgdx(gdxName, list(name = symName, compress = compress, ts = ts), squeeze = squeeze, useDomInfo = useDomInfo):</span> GDX file 'inst/extdata/GAMS/FarmDynRexampledata.gdx' not found</span>
<span class="r-in"><span><span class="va">BINDir</span> <span class="op">&lt;-</span> <span class="st">"inst/extdata/GAMS"</span></span></span>
<span class="r-in"><span><span class="va">datafile</span> <span class="op">&lt;-</span> <span class="st">'FarmDynRexampledata.gdx'</span></span></span>
<span class="r-in"><span><span class="fu"><a href="gdxbinwider.html">gdxbinwider</a></span><span class="op">(</span><span class="va">datafile</span>, <span class="va">BINDir</span>, <span class="st">'map2binid'</span>, <span class="st">'mapping'</span><span class="op">)</span></span></span>
<span class="r-err co"><span class="r-pr">#&gt;</span> <span class="error">Error in rgdx(gdxName, list(name = symName, compress = compress, ts = ts), squeeze = squeeze, useDomInfo = useDomInfo):</span> GDX file 'inst/extdata/GAMS/FarmDynRexampledata.gdx' not found</span>
</code></pre></div>
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docs/reference/groupstats.html 0 → 100644
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<!DOCTYPE html>
<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1.0"><title>Generate descriptive statistics and save to GDX — groupstats • FarmDynR</title><!-- jquery --><script src="https://cdnjs.cloudflare.com/ajax/libs/jquery/3.4.1/jquery.min.js" integrity="sha256-CSXorXvZcTkaix6Yvo6HppcZGetbYMGWSFlBw8HfCJo=" crossorigin="anonymous"></script><!-- Bootstrap --><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/3.4.1/css/bootstrap.min.css" integrity="sha256-bZLfwXAP04zRMK2BjiO8iu9pf4FbLqX6zitd+tIvLhE=" crossorigin="anonymous"><script src="https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/3.4.1/js/bootstrap.min.js" integrity="sha256-nuL8/2cJ5NDSSwnKD8VqreErSWHtnEP9E7AySL+1ev4=" crossorigin="anonymous"></script><!-- bootstrap-toc --><link rel="stylesheet" href="../bootstrap-toc.css"><script src="../bootstrap-toc.js"></script><!-- Font Awesome icons --><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/all.min.css" integrity="sha256-mmgLkCYLUQbXn0B1SRqzHar6dCnv9oZFPEC1g1cwlkk=" crossorigin="anonymous"><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/v4-shims.min.css" integrity="sha256-wZjR52fzng1pJHwx4aV2AO3yyTOXrcDW7jBpJtTwVxw=" crossorigin="anonymous"><!-- clipboard.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.6/clipboard.min.js" integrity="sha256-inc5kl9MA1hkeYUt+EC3BhlIgyp/2jDIyBLS6k3UxPI=" crossorigin="anonymous"></script><!-- headroom.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/headroom.min.js" integrity="sha256-AsUX4SJE1+yuDu5+mAVzJbuYNPHj/WroHuZ8Ir/CkE0=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/jQuery.headroom.min.js" integrity="sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4=" crossorigin="anonymous"></script><!-- pkgdown --><link href="../pkgdown.css" rel="stylesheet"><script src="../pkgdown.js"></script><meta property="og:title" content="Generate descriptive statistics and save to GDX — groupstats"><meta property="og:description" content="`groupstats()` returns descriptive statistics per group based on the mapping given. For example, if your mapping
is 'regions', this function will give you the weighted mean, median, min, max, number of observations per variable for each
region based on the individual farm data. When `writegdx` is `TRUE`, it writes the GDX in the format 'farmStats_(mapping).gdx'
`groupstats()` returns descriptive statistics per group based on the mapping given. For example, if your mapping
is 'regions', this function will give you the weighted mean, median, min, max, number of observations per variable for each
region based on the individual farm data. When `writegdx` is `TRUE`, it writes the GDX in the format 'farmStats_(mapping).gdx'"><!-- mathjax --><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity="sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin="anonymous"></script><!--[if lt IE 9]>
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<h1>Generate descriptive statistics and save to GDX</h1>
<div class="hidden name"><code>groupstats.Rd</code></div>
</div>
<div class="ref-description">
<p>`groupstats()` returns descriptive statistics per group based on the mapping given. For example, if your mapping
is 'regions', this function will give you the weighted mean, median, min, max, number of observations per variable for each
region based on the individual farm data. When `writegdx` is `TRUE`, it writes the GDX in the format 'farmStats_(mapping).gdx'</p>
<p>`groupstats()` returns descriptive statistics per group based on the mapping given. For example, if your mapping
is 'regions', this function will give you the weighted mean, median, min, max, number of observations per variable for each
region based on the individual farm data. When `writegdx` is `TRUE`, it writes the GDX in the format 'farmStats_(mapping).gdx'</p>
</div>
<div id="ref-usage">
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">groupstats</span><span class="op">(</span></span>
<span> <span class="va">filename</span>,</span>
<span> <span class="va">BINDir</span>,</span>
<span> <span class="va">gdxmap</span>,</span>
<span> <span class="va">mapping</span>,</span>
<span> <span class="va">cols</span>,</span>
<span> <span class="va">w</span>,</span>
<span> writegdx <span class="op">=</span> <span class="cn">TRUE</span>,</span>
<span> filtern <span class="op">=</span> <span class="cn">FALSE</span></span>
<span><span class="op">)</span></span>
<span></span>
<span><span class="fu">groupstats</span><span class="op">(</span></span>
<span> <span class="va">filename</span>,</span>
<span> <span class="va">BINDir</span>,</span>
<span> <span class="va">gdxmap</span>,</span>
<span> <span class="va">mapping</span>,</span>
<span> <span class="va">cols</span>,</span>
<span> <span class="va">w</span>,</span>
<span> writegdx <span class="op">=</span> <span class="cn">TRUE</span>,</span>
<span> filtern <span class="op">=</span> <span class="cn">FALSE</span></span>
<span><span class="op">)</span></span></code></pre></div>
</div>
<div id="arguments">
<h2>Arguments</h2>
<dl><dt>filename</dt>
<dd><p>Name of the GDX file with BIN data and mappings.</p></dd>
<dt>BINDir</dt>
<dd><p>Directory where the FADN data is located.</p></dd>
<dt>gdxmap</dt>
<dd><p>Name of the set in the GDX file that contains the mapping (e.g. Regs2BINID)</p></dd>
<dt>mapping</dt>
<dd><p>Column name of the characteristic/variable to be grouped by (e.g. "Regions" or "Regs")</p></dd>
<dt>cols</dt>
<dd><p>Which columns to derive descriptive statistics from</p></dd>
<dt>w</dt>
<dd><p>Column with the Weights for the weighted mean</p></dd>
<dt>writegdx</dt>
<dd><p>Logical. If `TRUE`, it writes a GDX with the descriptive statistics.</p></dd>
<dt>filtern</dt>
<dd><p>Logical. If `TRUE`, results will be limited to more than 15 observations per variable for reporting</p></dd>
</dl></div>
<div id="value">
<h2>Value</h2>
<p>A tibble `tbl_df`.</p>
<p>A tibble `tbl_df`.</p>
</div>
<div id="see-also">
<h2>See also</h2>
<div class="dont-index">
<ul><li><p><code>summary]</code>summary statistics</p></li>
<li><p><code><a href="https://rdrr.io/pkg/psych/man/describe.html" class="external-link">describe</a></code>Descriptive statistics</p></li>
<li><p><code><a href="https://rdrr.io/pkg/gdxrrw/man/wgdx.html" class="external-link">wgdx</a></code>Write R data to GDX</p></li>
<li><p><code><a href="https://rdrr.io/pkg/gdxrrw/man/wgdx.html" class="external-link">wgdx.lst</a></code>Write multiple symbols to GDX</p></li>
<li><p><code><a href="https://tidyr.tidyverse.org/reference/pivot_longer.html" class="external-link">pivot_longer</a></code>Make dataframes longer</p></li>
</ul><ul><li><p><code>summary]</code>summary statistics</p></li>
<li><p><code><a href="https://rdrr.io/pkg/psych/man/describe.html" class="external-link">describe</a></code>Descriptive statistics</p></li>
<li><p><code><a href="https://rdrr.io/pkg/gdxrrw/man/wgdx.html" class="external-link">wgdx</a></code>Write R data to GDX</p></li>
<li><p><code><a href="https://rdrr.io/pkg/gdxrrw/man/wgdx.html" class="external-link">wgdx.lst</a></code>Write multiple symbols to GDX</p></li>
<li><p><code><a href="https://tidyr.tidyverse.org/reference/pivot_longer.html" class="external-link">pivot_longer</a></code>Make dataframes longer</p></li>
</ul></div>
</div>
<div id="ref-examples">
<h2>Examples</h2>
<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="va">BINDir</span> <span class="op">&lt;-</span> <span class="st">"inst/extdata/GAMS"</span></span></span>
<span class="r-in"><span><span class="va">datafile</span> <span class="op">&lt;-</span> <span class="st">'FarmDynRexampledata.gdx'</span></span></span>
<span class="r-in"><span><span class="fu">groupstats</span><span class="op">(</span><span class="st">'FarmDynRexampledata.gdx'</span>,</span></span>
<span class="r-in"><span> BINDir<span class="op">=</span><span class="st">"inst/extdata/GAMS/"</span>,</span></span>
<span class="r-in"><span> gdxmap <span class="op">=</span> <span class="st">'map2binid'</span>,</span></span>
<span class="r-in"><span> mapping <span class="op">=</span> <span class="st">'mapping'</span>,</span></span>
<span class="r-in"><span> cols <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">'a'</span>, <span class="st">'b'</span><span class="op">)</span>,</span></span>
<span class="r-in"><span> w<span class="op">=</span><span class="st">'Weight'</span><span class="op">)</span></span></span>
<span class="r-err co"><span class="r-pr">#&gt;</span> <span class="error">Error in rgdx(gdxName, list(name = symName, compress = compress, ts = ts), squeeze = squeeze, useDomInfo = useDomInfo):</span> GDX file 'inst/extdata/GAMS//FarmDynRexampledata.gdx' not found</span>
<span class="r-in"><span><span class="va">BINDir</span> <span class="op">&lt;-</span> <span class="st">"inst/extdata/GAMS"</span></span></span>
<span class="r-in"><span><span class="va">datafile</span> <span class="op">&lt;-</span> <span class="st">'FarmDynRexampledata.gdx'</span></span></span>
<span class="r-in"><span><span class="fu">groupstats</span><span class="op">(</span><span class="st">'FarmDynRexampledata.gdx'</span>,</span></span>
<span class="r-in"><span> BINDir<span class="op">=</span><span class="st">"inst/extdata/GAMS/"</span>,</span></span>
<span class="r-in"><span> gdxmap <span class="op">=</span> <span class="st">'map2binid'</span>,</span></span>
<span class="r-in"><span> mapping <span class="op">=</span> <span class="st">'mapping'</span>,</span></span>
<span class="r-in"><span> cols <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">'a'</span>, <span class="st">'b'</span><span class="op">)</span>,</span></span>
<span class="r-in"><span> w<span class="op">=</span><span class="st">'Weight'</span><span class="op">)</span></span></span>
<span class="r-err co"><span class="r-pr">#&gt;</span> <span class="error">Error in rgdx(gdxName, list(name = symName, compress = compress, ts = ts), squeeze = squeeze, useDomInfo = useDomInfo):</span> GDX file 'inst/extdata/GAMS//FarmDynRexampledata.gdx' not found</span>
</code></pre></div>
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<h1>Reference</h1>
</div>
<table class="ref-index"><colgroup><col class="alias"><col class="title"></colgroup><tbody><tr><th colspan="2">
<h2 id="all-functions">All functions <a href="#all-functions" class="anchor" aria-hidden="true"></a></h2>
<p class="section-desc"></p>
</th>
</tr></tbody><tbody><tr><td>
<p><code><a href="abs_diff.html">abs_diff()</a></code> </p>
</td>
<td><p>Calculates the absolute difference of the reference and the scenarios in a new column</p></td>
</tr><tr><td>
<p><code><a href="fadn2fd.html">fadn2fd()</a></code> </p>
</td>
<td><p>`fadn2fd()` imports the FADN data from the csv files</p></td>
</tr><tr><td>
<p><code><a href="fd_desc.html">fd_desc()</a></code> </p>
</td>
<td><p>`fd_desc()` calculates the descriptive statistics of the farm data</p></td>
</tr><tr><td>
<p><code><a href="first_match_col.html">first_match_col()</a></code> </p>
</td>
<td><p>`first_match_col()` finds the first matching column in a dataframe</p></td>
</tr><tr><td>
<p><code><a href="gdxbinwider.html">gdxbinwider()</a></code> <code><a href="gdxbinwider.html">gdxbinwider()</a></code> </p>
</td>
<td><p>Join BIN data together, make joined dataset wider, and group by a mapping</p></td>
</tr><tr><td>
<p><code><a href="gdxload.html">gdxload()</a></code> <code><a href="gdxload.html">gdxload()</a></code> </p>
</td>
<td><p>Load from GDX</p></td>
</tr><tr><td>
<p><code><a href="gdxreshape.html">gdxreshape()</a></code> <code><a href="gdxreshape.html">gdxreshape()</a></code> </p>
</td>
<td><p>Reshape from wide to long and save to GDX</p></td>
</tr><tr><td>
<p><code><a href="groupstats.html">groupstats()</a></code> <code><a href="groupstats.html">groupstats()</a></code> </p>
</td>
<td><p>Generate descriptive statistics and save to GDX</p></td>
</tr><tr><td>
<p><code><a href="is.nan.data.frame.html">is.nan(<i>&lt;data.frame&gt;</i>)</a></code> </p>
</td>
<td><p>`is.nan.data.frame()` checks if there are any NaNs in a dataframe (`is.nan()` does not work for dfs)</p></td>
</tr><tr><td>
<p><code><a href="load_dumps.html">load_dumps()</a></code> </p>
</td>
<td><p>`load_dumps()` loads the p_res from the dump gdx files</p></td>
</tr><tr><td>
<p><code><a href="load_dump_marg.html">load_dump_marg()</a></code> </p>
</td>
<td><p>`load_dump_marg()` loads any marginal from the dump gdx files</p></td>
</tr><tr><td>
<p><code><a href="load_dump_par.html">load_dump_par()</a></code> </p>
</td>
<td><p>`load_dump_par()` loads any parameter from the dump gdx files</p></td>
</tr><tr><td>
<p><code><a href="load_dump_scalar.html">load_dump_scalar()</a></code> </p>
</td>
<td><p>`load_dump_scalar()` loads any scalar from the dump gdx files</p></td>
</tr><tr><td>
<p><code><a href="Modes.html">Modes()</a></code> <code><a href="Modes.html">Modes()</a></code> </p>
</td>
<td><p>Retrieve mode of vector</p></td>
</tr><tr><td>
<p><code><a href="replace_first_match_col.html">replace_first_match_col()</a></code> </p>
</td>
<td><p>`replace_first_match_col()` replaces the name of the column in `first_match_col()` with what the user inputs</p></td>
</tr><tr><td>
<p><code><a href="rgdx.var.html">rgdx.var()</a></code> </p>
</td>
<td><p>Improved function to load variables from gdx files (from Renger in GAMSWorld forum)</p></td>
</tr><tr><td>
<p><code><a href="rm_lown.html">rm_lown()</a></code> </p>
</td>
<td><p>`rm_lown()` removes aggregated farms with less than 15 farms for reporting</p></td>
</tr><tr><td>
<p><code><a href="runFarmDynfromBatch.html">runFarmDynfromBatch()</a></code> <code><a href="runFarmDynfromBatch.html">runFarmDynfromBatch()</a></code> </p>
</td>
<td><p>Execute FarmDyn</p></td>
</tr><tr><td>
<p><code><a href="scen_analysis.html">scen_analysis()</a></code> </p>
</td>
<td><p>Data analysis function for repeated tasks
This loads p_res from different scenarios</p></td>
</tr><tr><td>
<p><code><a href="scen_diff.html">scen_diff()</a></code> </p>
</td>
<td><p>Calculates the relative difference of the reference and the scenarios in a new column</p></td>
</tr><tr><td>
<p><code><a href="str_line_replace.html">str_line_replace()</a></code> <code><a href="str_line_replace.html">str_firstLine_replace()</a></code> <code><a href="str_line_replace.html">str_lastLine_replace()</a></code> <code><a href="str_line_replace.html">str_line_replace()</a></code> <code><a href="str_line_replace.html">str_firstLine_replace()</a></code> <code><a href="str_line_replace.html">str_lastLine_replace()</a></code> </p>
</td>
<td><p>Replace first or last line in strings</p></td>
</tr><tr><td>
<p><code><a href="updateFarmData.html">updateFarmData()</a></code> <code><a href="updateFarmData.html">updateFarmData()</a></code> </p>
</td>
<td><p>Reshape from wide to long and save to GDX
Create sample farms</p></td>
</tr><tr><td>
<p><code><a href="vars_dump.html">vars_dump()</a></code> </p>
</td>
<td><p>Load variables from dump gdx files and return a data.table</p></td>
</tr><tr><td>
<p><code><a href="writeBatch.html">writeBatch()</a></code> <code><a href="writeBatch.html">writeBatch()</a></code> </p>
</td>
<td><p>Write batch file for batch file execution mode in FarmDyn</p></td>
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<h1>`is.nan.data.frame()` checks if there are any NaNs in a dataframe (`is.nan()` does not work for dfs)</h1>
<div class="hidden name"><code>is.nan.data.frame.Rd</code></div>
</div>
<div class="ref-description">
<p>`is.nan.data.frame()` checks if there are any NaNs in a dataframe (`is.nan()` does not work for dfs)</p>
</div>
<div id="ref-usage">
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="co"># S3 method for data.frame</span></span>
<span><span class="fu"><a href="https://rdrr.io/r/base/is.finite.html" class="external-link">is.nan</a></span><span class="op">(</span><span class="va">x</span><span class="op">)</span></span></code></pre></div>
</div>
<div id="arguments">
<h2>Arguments</h2>
<dl><dt>x</dt>
<dd><p>A dataframe</p></dd>
</dl></div>
<div id="value">
<h2>Value</h2>
<p>A dataframe with TRUE or FALSE for each column</p>
</div>
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docs/reference/load_dump_marg.html 0 → 100644
View file @ c655edbc
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<h1>`load_dump_marg()` loads any marginal from the dump gdx files</h1>
<div class="hidden name"><code>load_dump_marg.Rd</code></div>
</div>
<div class="ref-description">
<p>`load_dump_marg()` loads any marginal from the dump gdx files</p>
</div>
<div id="ref-usage">
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">load_dump_marg</span><span class="op">(</span><span class="va">res_fold</span>, <span class="va">scen_name</span>, <span class="va">marginal</span><span class="op">)</span></span></code></pre></div>
</div>
<div id="arguments">
<h2>Arguments</h2>
<dl><dt>res_fold</dt>
<dd><p>Path to the folder where the gdx files are</p></dd>
<dt>scen_name</dt>
<dd><p>Name of the scenarios to load</p></dd>
<dt>marginal</dt>
<dd><p>Name of the marginal to load</p></dd>
</dl></div>
<div id="value">
<h2>Value</h2>
<p>A data.table with the marginal</p>
</div>
</div>
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<h1>`load_dump_par()` loads any parameter from the dump gdx files</h1>
<div class="hidden name"><code>load_dump_par.Rd</code></div>
</div>
<div class="ref-description">
<p>`load_dump_par()` loads any parameter from the dump gdx files</p>
</div>
<div id="ref-usage">
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">load_dump_par</span><span class="op">(</span><span class="va">res_fold</span>, <span class="va">scen_name</span>, <span class="va">param</span>, names <span class="op">=</span> <span class="cn">NULL</span><span class="op">)</span></span></code></pre></div>
</div>
<div id="arguments">
<h2>Arguments</h2>
<dl><dt>res_fold</dt>
<dd><p>Path to the folder where the gdx files are</p></dd>
<dt>scen_name</dt>
<dd><p>Name of the scenarios to load</p></dd>
<dt>param</dt>
<dd><p>Name of the parameter to load</p></dd>
<dt>names</dt>
<dd><p>Names of the columns to load</p></dd>
</dl></div>
<div id="value">
<h2>Value</h2>
<p>A data.table with the parameters</p>
</div>
</div>
<div class="col-md-3 hidden-xs hidden-sm" id="pkgdown-sidebar">
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<p></p><p>Developed by Hugo Scherer.</p>
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<div class="pkgdown">
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docs/reference/load_dump_scalar.html 0 → 100644
View file @ c655edbc
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<h1>`load_dump_scalar()` loads any scalar from the dump gdx files</h1>
<div class="hidden name"><code>load_dump_scalar.Rd</code></div>
</div>
<div class="ref-description">
<p>`load_dump_scalar()` loads any scalar from the dump gdx files</p>
</div>
<div id="ref-usage">
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">load_dump_scalar</span><span class="op">(</span><span class="va">res_fold</span>, <span class="va">scen_name</span>, <span class="va">scalar</span><span class="op">)</span></span></code></pre></div>
</div>
<div id="arguments">
<h2>Arguments</h2>
<dl><dt>res_fold</dt>
<dd><p>Path to the folder where the gdx files are</p></dd>
<dt>scen_name</dt>
<dd><p>Name of the scenarios to load</p></dd>
<dt>scalar</dt>
<dd><p>Name of the scalar to load</p></dd>
</dl></div>
<div id="value">
<h2>Value</h2>
<p>A data.table with the scalar</p>
</div>
<div id="ref-examples">
<h2>Examples</h2>
<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu">load_dump_scalar</span><span class="op">(</span>res_fold <span class="op">=</span> <span class="va">res_fold</span>, scen_name <span class="op">=</span> <span class="va">scen_name</span>, scalar <span class="op">=</span> <span class="st">"p_Nmin"</span><span class="op">)</span></span></span>
<span class="r-err co"><span class="r-pr">#&gt;</span> <span class="error">Error in eval(expr, envir, enclos):</span> object 'res_fold' not found</span>
</code></pre></div>
</div>
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