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<a class="navbar-link" href="index.html">FarmDynR</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="">0.2.0</span>
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<h1>Authors</h1>
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<ul class="list-unstyled"><li>
<p><strong>Hugo Scherer</strong>. Author, maintainer.
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<p><strong>Marc Müller</strong>. Contributor.
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<h1 id="citation">Citation</h1>
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<p>Scherer H (2023).
<em>FarmDynR: Run FarmDyn from R and create sample farms</em>.
R package version 0.2.0, <a href="https://www.wur.nl/" class="external-link">https://www.wur.nl/</a>.
</p>
<pre>@Manual{,
title = {FarmDynR: Run FarmDyn from R and create sample farms},
author = {Hugo Scherer},
year = {2023},
note = {R package version 0.2.0},
url = {https://www.wur.nl/},
}</pre>
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<title>Run FarmDyn from R and create sample farms • FarmDynR</title>
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<meta property="og:description" content="This package allows the user to run FarmDyn from R and includes useful functions such as:
Modes() to retrieve the mode of any set of numbers or characters in a dataset or vector, and
groupstats() to generate descriptive statistics used for reporting based on a grouping.
It also writes gdx files for groupstats() and samplr(), and includes a faster version of gdxrrw:wgdx.reshape() called gdxreshape()">
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<a class="navbar-link" href="index.html">FarmDynR</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="">0.2.0</span>
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<div class="page-header"><h1 id="farmdynr">FarmDynR<a class="anchor" aria-label="anchor" href="#farmdynr"></a>
</h1></div>
<p>Developed by Hugo Scherer and Marc Müller at Wageningen Economic Research.</p>
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<p>The goal of FarmDynR is to give the user the ability to aggregate FADN data to create representative farms for any grouping available, generate descriptive statistics, and to run FarmDyn from R.</p>
<div class="section level2">
<h2 id="requirements">Requirements<a class="anchor" aria-label="anchor" href="#requirements"></a>
</h2>
<p>This package requires that you have GAMS and FarmDyn installed. Additionally, the package imports from: - gdxrrw (remember to load GAMS with <code>igdx()</code> with the path to your version of GAMS) - readr - dplyr - tidyr - readxl</p>
<p>It also suggests: - stringr</p>
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<h2 id="installation">Installation<a class="anchor" aria-label="anchor" href="#installation"></a>
</h2>
<p>You can install the development version of FarmDynR like so:</p>
<div class="sourceCode" id="cb1"><pre class="downlit sourceCode r">
<code class="sourceCode R"><span> <span class="fu"><a href="https://rdrr.io/r/utils/install.packages.html" class="external-link">install.packages</a></span><span class="op">(</span><span class="st">'https://gitlab.iiasa.ac.at/mind-step/FarmDynR'</span><span class="op">)</span></span></code></pre></div>
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<h2 id="workflow">Workflow<a class="anchor" aria-label="anchor" href="#workflow"></a>
</h2>
<p>The workflow for this package is as follows: 1. Read the FADN data into R 2. Run <code><a href="reference/fadn2fd.html">fadn2fd()</a></code> with the FADN data, farmbranch desired, the mapping and the option to save GDX files based on the mapping - Yields will be calculated and the FADN data will be prepared - Outliers are removed 3. Write batch file with <code><a href="reference/writeBatch.html">writeBatch()</a></code> and run FarmDyn with <code><a href="reference/runFarmDynfromBatch.html">runFarmDynfromBatch()</a></code> using the created batch file - Optional: Create descriptive statistics for reporting with <code><a href="reference/fd_desc.html">fd_desc()</a></code> with the farmbranch</p>
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<h2 id="example">Example<a class="anchor" aria-label="anchor" href="#example"></a>
</h2>
<div class="sourceCode" id="cb2"><pre class="downlit sourceCode r">
<code class="sourceCode R"><span><span class="kw"><a href="https://rdrr.io/r/base/library.html" class="external-link">library</a></span><span class="op">(</span><span class="va"><a href="https://www.wur.nl/" class="external-link">FarmDynR</a></span><span class="op">)</span></span>
<span></span>
<span><span class="co"># Read in FADN data</span></span>
<span><span class="va">fadn</span> <span class="op">&lt;-</span> <span class="fu">read_fadn</span><span class="op">(</span><span class="st">"path/to/fadn/data"</span><span class="op">)</span></span>
<span></span>
<span><span class="co"># Create mapping</span></span>
<span><span class="va">mapping</span> <span class="op">&lt;-</span> <span class="fu"><a href="https://rdrr.io/r/base/list.html" class="external-link">list</a></span><span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"NUTS0"</span>, <span class="st">"misc%OrganicCode"</span><span class="op">)</span>, <span class="st">"NUTS0"</span>, <span class="st">"NUTS2"</span><span class="op">)</span></span>
<span></span>
<span><span class="co"># Create FarmDyn data</span></span>
<span><span class="va">fd_data</span> <span class="op">&lt;-</span> <span class="fu"><a href="reference/fadn2fd.html">fadn2fd</a></span><span class="op">(</span><span class="va">fadn</span>, <span class="st">"Dairy"</span>, <span class="va">mapping</span>, save_gdx <span class="op">=</span> <span class="cn">FALSE</span><span class="op">)</span></span>
<span></span>
<span><span class="co"># Write batch file</span></span>
<span><span class="fu"><a href="reference/writeBatch.html">writeBatch</a></span><span class="op">(</span><span class="va">fd_data</span>, <span class="st">"path/to/batch/file"</span><span class="op">)</span></span>
<span></span>
<span><span class="co"># Run FarmDyn</span></span>
<span><span class="fu"><a href="reference/runFarmDynfromBatch.html">runFarmDynfromBatch</a></span><span class="op">(</span><span class="st">"path/to/batch/file"</span><span class="op">)</span></span>
<span></span>
<span><span class="co"># Create descriptive statistics</span></span>
<span><span class="fu"><a href="reference/fd_desc.html">fd_desc</a></span><span class="op">(</span><span class="va">fd_data</span><span class="op">)</span></span></code></pre></div>
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<h2 data-toc-skip>License</h2>
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<li><small>GPL (&gt;= 3)</small></li>
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<li><a href="authors.html#citation">Citing FarmDynR</a></li>
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<h2 data-toc-skip>Developers</h2>
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<li>Hugo Scherer <br><small class="roles"> Author, maintainer </small> </li>
<li><a href="authors.html">More about authors...</a></li>
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This function returns the mode of a vector. If the vector contains a character or factor, the most common character/factor is returned. Numbers written as characters will be compatible with non-character numbers (i.e. doubles/numeric), but the function returns a character."><!-- mathjax --><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity="sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin="anonymous"></script><!--[if lt IE 9]>
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<h1>Retrieve mode of vector</h1>
<div class="hidden name"><code>Modes.Rd</code></div>
</div>
<div class="ref-description">
<p>This function returns the mode of a vector. If the vector contains a character or factor, the most common character/factor is returned. Numbers written as characters will be compatible with non-character numbers (i.e. doubles/numeric), but the function returns a character.</p>
<p>This function returns the mode of a vector. If the vector contains a character or factor, the most common character/factor is returned. Numbers written as characters will be compatible with non-character numbers (i.e. doubles/numeric), but the function returns a character.</p>
</div>
<div id="ref-usage">
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">Modes</span><span class="op">(</span><span class="va">x</span><span class="op">)</span></span>
<span></span>
<span><span class="fu">Modes</span><span class="op">(</span><span class="va">x</span><span class="op">)</span></span></code></pre></div>
</div>
<div id="arguments">
<h2>Arguments</h2>
<dl><dt>x</dt>
<dd><p>vector from which to retrieve the mode from.</p></dd>
</dl></div>
<div id="value">
<h2>Value</h2>
<p>same class as 'x'.</p>
<p>same class as 'x'.</p>
</div>
<div id="see-also">
<h2>See also</h2>
<div class="dont-index"><p>[tabulate()]</p>
<p>[tabulate()]</p></div>
</div>
<div id="ref-examples">
<h2>Examples</h2>
<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu">Modes</span><span class="op">(</span>x <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="fl">1</span>, <span class="fl">1</span>, <span class="fl">3</span>, <span class="fl">0</span>, <span class="fl">2</span>, <span class="fl">4</span>, <span class="fl">2</span>, <span class="fl">1</span>, <span class="fl">5</span>, <span class="fl">2</span>, <span class="fl">1</span><span class="op">)</span><span class="op">)</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] 1</span>
<span class="r-in"><span><span class="fu">Modes</span><span class="op">(</span>x <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">'a'</span>,<span class="st">'b'</span>, <span class="st">'c'</span>, <span class="st">'a'</span>, <span class="st">'c'</span>, <span class="st">'a'</span><span class="op">)</span><span class="op">)</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] "a"</span>
<span class="r-in"><span><span class="fu">Modes</span><span class="op">(</span>x <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">'a'</span>, <span class="fl">2</span>, <span class="st">'x'</span>, <span class="fl">7895</span>, <span class="fl">1</span>, <span class="st">'2'</span>, <span class="st">'t'</span>, <span class="fl">2</span>, <span class="fl">1</span><span class="op">)</span><span class="op">)</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] "2"</span>
<span class="r-in"><span><span class="fu">Modes</span><span class="op">(</span>x <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="fl">1</span>, <span class="fl">1</span>, <span class="fl">3</span>, <span class="fl">0</span>, <span class="fl">2</span>, <span class="fl">4</span>, <span class="fl">2</span>, <span class="fl">1</span>, <span class="fl">5</span>, <span class="fl">2</span>, <span class="fl">1</span><span class="op">)</span><span class="op">)</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] 1</span>
<span class="r-in"><span><span class="fu">Modes</span><span class="op">(</span>x <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">'a'</span>,<span class="st">'b'</span>, <span class="st">'c'</span>, <span class="st">'a'</span>, <span class="st">'c'</span>, <span class="st">'a'</span><span class="op">)</span><span class="op">)</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] "a"</span>
<span class="r-in"><span><span class="fu">Modes</span><span class="op">(</span>x <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">'a'</span>, <span class="fl">2</span>, <span class="st">'x'</span>, <span class="fl">7895</span>, <span class="fl">1</span>, <span class="st">'2'</span>, <span class="st">'t'</span>, <span class="fl">2</span>, <span class="fl">1</span><span class="op">)</span><span class="op">)</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] "2"</span>
</code></pre></div>
</div>
</div>
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<h1>Calculates the absolute difference of the reference and the scenarios in a new column</h1>
<div class="hidden name"><code>abs_diff.Rd</code></div>
</div>
<div class="ref-description">
<p>Calculates the absolute difference of the reference and the scenarios in a new column</p>
</div>
<div id="ref-usage">
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">abs_diff</span><span class="op">(</span><span class="va">data</span>, <span class="va">vars_to_diff</span><span class="op">)</span></span></code></pre></div>
</div>
<div id="arguments">
<h2>Arguments</h2>
<dl><dt>data</dt>
<dd><p>A dataframe</p></dd>
<dt>vars_to_diff</dt>
<dd><p>A vector with the names of the variables to calculate the difference</p></dd>
</dl></div>
<div id="value">
<h2>Value</h2>
<p>A dataframe with the new columns</p>
</div>
</div>
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<h1>`fadn2fd()` imports the FADN data from the csv files</h1>
<div class="hidden name"><code>fadn2fd.Rd</code></div>
</div>
<div class="ref-description">
<p>`fadn2fd()` imports the FADN data from the csv files</p>
</div>
<div id="ref-usage">
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">fadn2fd</span><span class="op">(</span></span>
<span> <span class="va">fadn_data</span>,</span>
<span> <span class="va">mapping</span>,</span>
<span> farmbranch <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"arable"</span>, <span class="st">"dairy"</span><span class="op">)</span>,</span>
<span> save_gdx <span class="op">=</span> <span class="cn">FALSE</span></span>
<span><span class="op">)</span></span></code></pre></div>
</div>
<div id="arguments">
<h2>Arguments</h2>
<dl><dt>fadn_data</dt>
<dd><p>FADN</p></dd>
<dt>mapping</dt>
<dd><p>A vector with the names of the columns to be mapped</p></dd>
<dt>farmbranch</dt>
<dd><p>Either arable or dairy</p></dd>
<dt>save_gdx</dt>
<dd><p>Logical. If TRUE, it saves to gdx files</p></dd>
</dl></div>
<div id="value">
<h2>Value</h2>
<p>A list of dataframes with the FADN data</p>
</div>
</div>
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<h1>`fd_desc()` calculates the descriptive statistics of the farm data</h1>
<div class="hidden name"><code>fd_desc.Rd</code></div>
</div>
<div class="ref-description">
<p>`fd_desc()` calculates the descriptive statistics of the farm data</p>
</div>
<div id="ref-usage">
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">fd_desc</span><span class="op">(</span><span class="va">farm_data</span>, type <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"arable"</span>, <span class="st">"dairy"</span><span class="op">)</span>, csv <span class="op">=</span> <span class="cn">FALSE</span>, dir <span class="op">=</span> <span class="cn">NULL</span><span class="op">)</span></span></code></pre></div>
</div>
<div id="arguments">
<h2>Arguments</h2>
<dl><dt>farm_data</dt>
<dd><p>A dataframe with the p_farmData</p></dd>
<dt>type</dt>
<dd><p>Type of farm data to analyse (Dairy or Arable farms)</p></dd>
<dt>csv</dt>
<dd><p>Logical. If TRUE, it saves the results as a csv</p></dd>
</dl></div>
<div id="value">
<h2>Value</h2>
<p>A dataframe with the descriptive statistics</p>
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<h1>`first_match_col()` finds the first matching column in a dataframe</h1>
<div class="hidden name"><code>first_match_col.Rd</code></div>
</div>
<div class="ref-description">
<p>`first_match_col()` finds the first matching column in a dataframe</p>
</div>
<div id="ref-usage">
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">first_match_col</span><span class="op">(</span><span class="va">x</span>, <span class="va">pattern</span>, how <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"all"</span>, <span class="st">"any"</span><span class="op">)</span><span class="op">)</span></span></code></pre></div>
</div>
<div id="arguments">
<h2>Arguments</h2>
<dl><dt>x</dt>
<dd><p>A dataframe</p></dd>
<dt>pattern</dt>
<dd><p>A pattern to match</p></dd>
<dt>how</dt>
<dd><p>How to match the pattern (all or any)</p></dd>
</dl></div>
<div id="value">
<h2>Value</h2>
<p>The name of the first matching column</p>
</div>
<div id="ref-examples">
<h2>Examples</h2>
<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="va">data</span> <span class="op">&lt;-</span> <span class="fu"><a href="https://rdrr.io/r/base/data.frame.html" class="external-link">data.frame</a></span><span class="op">(</span>a <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"a"</span>, <span class="st">"b"</span>, <span class="st">"c"</span><span class="op">)</span>, b <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"a"</span>, <span class="st">" "</span>, <span class="st">"c"</span><span class="op">)</span>, c <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"a"</span>, <span class="st">"b"</span>, <span class="st">"1"</span><span class="op">)</span><span class="op">)</span></span></span>
<span class="r-in"><span><span class="fu">first_match_col</span><span class="op">(</span><span class="va">data</span>, <span class="st">"\\D"</span>, <span class="st">"all"</span><span class="op">)</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] "a"</span>
<span class="r-in"><span><span class="fu">first_match_col</span><span class="op">(</span><span class="va">data</span>, <span class="st">"\\d"</span>, <span class="st">"any"</span><span class="op">)</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] "c"</span>
</code></pre></div>
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docs/reference/gdxbinwider.html 0 → 100644
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<!DOCTYPE html>
<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1.0"><title>Join BIN data together, make joined dataset wider, and group by a mapping — gdxbinwider • FarmDynR</title><!-- jquery --><script src="https://cdnjs.cloudflare.com/ajax/libs/jquery/3.4.1/jquery.min.js" integrity="sha256-CSXorXvZcTkaix6Yvo6HppcZGetbYMGWSFlBw8HfCJo=" crossorigin="anonymous"></script><!-- Bootstrap --><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/3.4.1/css/bootstrap.min.css" integrity="sha256-bZLfwXAP04zRMK2BjiO8iu9pf4FbLqX6zitd+tIvLhE=" crossorigin="anonymous"><script src="https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/3.4.1/js/bootstrap.min.js" integrity="sha256-nuL8/2cJ5NDSSwnKD8VqreErSWHtnEP9E7AySL+1ev4=" crossorigin="anonymous"></script><!-- bootstrap-toc --><link rel="stylesheet" href="../bootstrap-toc.css"><script src="../bootstrap-toc.js"></script><!-- Font Awesome icons --><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/all.min.css" integrity="sha256-mmgLkCYLUQbXn0B1SRqzHar6dCnv9oZFPEC1g1cwlkk=" crossorigin="anonymous"><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/v4-shims.min.css" integrity="sha256-wZjR52fzng1pJHwx4aV2AO3yyTOXrcDW7jBpJtTwVxw=" crossorigin="anonymous"><!-- clipboard.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.6/clipboard.min.js" integrity="sha256-inc5kl9MA1hkeYUt+EC3BhlIgyp/2jDIyBLS6k3UxPI=" crossorigin="anonymous"></script><!-- headroom.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/headroom.min.js" integrity="sha256-AsUX4SJE1+yuDu5+mAVzJbuYNPHj/WroHuZ8Ir/CkE0=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/jQuery.headroom.min.js" integrity="sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4=" crossorigin="anonymous"></script><!-- pkgdown --><link href="../pkgdown.css" rel="stylesheet"><script src="../pkgdown.js"></script><meta property="og:title" content="Join BIN data together, make joined dataset wider, and group by a mapping — gdxbinwider"><meta property="og:description" content="The `gdxbinwider()` function takes in a GDX file with BIN data as parameters p_farmData_NL and p_farmData2GUI, and a mapping as a set.
Then the data is widened, and the output is a tibble.
The `gdxbinwider()` function takes in a GDX file with BIN data as parameters p_farmData_NL and p_farmData2GUI, and a mapping as a set.
Then the data is widened, and the output is a tibble."><!-- mathjax --><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity="sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin="anonymous"></script><!--[if lt IE 9]>
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<h1>Join BIN data together, make joined dataset wider, and group by a mapping</h1>
<div class="hidden name"><code>gdxbinwider.Rd</code></div>
</div>
<div class="ref-description">
<p>The `gdxbinwider()` function takes in a GDX file with BIN data as parameters p_farmData_NL and p_farmData2GUI, and a mapping as a set.
Then the data is widened, and the output is a tibble.</p>
<p>The `gdxbinwider()` function takes in a GDX file with BIN data as parameters p_farmData_NL and p_farmData2GUI, and a mapping as a set.
Then the data is widened, and the output is a tibble.</p>
</div>
<div id="ref-usage">
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">gdxbinwider</span><span class="op">(</span><span class="va">filename</span>, <span class="va">BINDir</span>, <span class="va">gdxmap</span>, <span class="va">mapping</span><span class="op">)</span></span>
<span></span>
<span><span class="fu">gdxbinwider</span><span class="op">(</span><span class="va">filename</span>, <span class="va">BINDir</span>, <span class="va">gdxmap</span>, <span class="va">mapping</span><span class="op">)</span></span></code></pre></div>
</div>
<div id="arguments">
<h2>Arguments</h2>
<dl><dt>filename</dt>
<dd><p>Name of the GDX file with BIN data and mappings.</p></dd>
<dt>BINDir</dt>
<dd><p>Directory where the FADN data is located.</p></dd>
<dt>gdxmap</dt>
<dd><p>Name of the set in the GDX file that contains the mapping (e.g. Regs2BINID)</p></dd>
<dt>mapping</dt>
<dd><p>Column name of the characteristic/variable to be grouped by (e.g. "Regions" or "Regs")</p></dd>
</dl></div>
<div id="value">
<h2>Value</h2>
<p>A tibble `tbl_df`.</p>
<p>A tibble `tbl_df`.</p>
</div>
<div id="see-also">
<h2>See also</h2>
<div class="dont-index">
<ul><li><p><code><a href="https://rdrr.io/pkg/gdxrrw/man/rgdx.html" class="external-link">rgdx.param</a></code>Load GDX parameters</p></li>
<li><p><code><a href="https://rdrr.io/pkg/gdxrrw/man/rgdx.html" class="external-link">rgdx.set</a></code>Load GDX sets</p></li>
<li><p><code><a href="https://tidyr.tidyverse.org/reference/pivot_wider.html" class="external-link">pivot_wider</a></code>Make dataframes wider</p></li>
</ul><ul><li><p><code><a href="https://rdrr.io/pkg/gdxrrw/man/rgdx.html" class="external-link">rgdx.param</a></code>Load GDX parameters</p></li>
<li><p><code><a href="https://rdrr.io/pkg/gdxrrw/man/rgdx.html" class="external-link">rgdx.set</a></code>Load GDX sets</p></li>
<li><p><code><a href="https://tidyr.tidyverse.org/reference/pivot_wider.html" class="external-link">pivot_wider</a></code>Make dataframes wider</p></li>
</ul></div>
</div>
<div id="ref-examples">
<h2>Examples</h2>
<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="va">BINDir</span> <span class="op">&lt;-</span> <span class="st">"inst/extdata/GAMS"</span></span></span>
<span class="r-in"><span><span class="va">datafile</span> <span class="op">&lt;-</span> <span class="st">'FarmDynRexampledata.gdx'</span></span></span>
<span class="r-in"><span><span class="fu">gdxbinwider</span><span class="op">(</span><span class="va">datafile</span>, <span class="va">BINDir</span>, <span class="st">'map2binid'</span>, <span class="st">'mapping'</span><span class="op">)</span></span></span>
<span class="r-err co"><span class="r-pr">#&gt;</span> <span class="error">Error in rgdx(gdxName, list(name = symName, compress = compress, ts = ts), squeeze = squeeze, useDomInfo = useDomInfo):</span> GDX file 'inst/extdata/GAMS/FarmDynRexampledata.gdx' not found</span>
<span class="r-in"><span><span class="va">BINDir</span> <span class="op">&lt;-</span> <span class="st">"inst/extdata/GAMS"</span></span></span>
<span class="r-in"><span><span class="va">datafile</span> <span class="op">&lt;-</span> <span class="st">'FarmDynRexampledata.gdx'</span></span></span>
<span class="r-in"><span><span class="fu">gdxbinwider</span><span class="op">(</span><span class="va">datafile</span>, <span class="va">BINDir</span>, <span class="st">'map2binid'</span>, <span class="st">'mapping'</span><span class="op">)</span></span></span>
<span class="r-err co"><span class="r-pr">#&gt;</span> <span class="error">Error in rgdx(gdxName, list(name = symName, compress = compress, ts = ts), squeeze = squeeze, useDomInfo = useDomInfo):</span> GDX file 'inst/extdata/GAMS/FarmDynRexampledata.gdx' not found</span>
</code></pre></div>
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`gdxload()` is a wrapper for gdxrrw::rgdx. It fixes the issue of having all UELs as factor levels for variables for which they do not belong."><!-- mathjax --><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity="sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin="anonymous"></script><!--[if lt IE 9]>
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<h1>Load from GDX</h1>
<div class="hidden name"><code>gdxload.Rd</code></div>
</div>
<div class="ref-description">
<p>`gdxload()` is a wrapper for gdxrrw::rgdx. It fixes the issue of having all UELs as factor levels for variables for which they do not belong.</p>
<p>`gdxload()` is a wrapper for gdxrrw::rgdx. It fixes the issue of having all UELs as factor levels for variables for which they do not belong.</p>
</div>
<div id="ref-usage">
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">gdxload</span><span class="op">(</span></span>
<span> <span class="va">filename</span>,</span>
<span> symbol <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"set"</span>, <span class="st">"param"</span>, <span class="st">"scalar"</span><span class="op">)</span>,</span>
<span> <span class="va">symName</span>,</span>
<span> names <span class="op">=</span> <span class="cn">NULL</span>,</span>
<span> <span class="va">...</span></span>
<span><span class="op">)</span></span>
<span></span>
<span><span class="fu">gdxload</span><span class="op">(</span></span>
<span> <span class="va">filename</span>,</span>
<span> symbol <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"set"</span>, <span class="st">"param"</span>, <span class="st">"scalar"</span><span class="op">)</span>,</span>
<span> <span class="va">symName</span>,</span>
<span> names <span class="op">=</span> <span class="cn">NULL</span>,</span>
<span> <span class="va">...</span></span>
<span><span class="op">)</span></span></code></pre></div>
</div>
<div id="arguments">
<h2>Arguments</h2>
<dl><dt>filename</dt>
<dd><p>Name of the GDX file and its location</p></dd>
<dt>symbol</dt>
<dd><p>The symbol type to be loaded (set, parameter, scalar)</p></dd>
<dt>symName</dt>
<dd><p>The name of the symbol to be loaded</p></dd>
<dt>names</dt>
<dd><p>Column names of the symbol</p></dd>
<dt>...</dt>
<dd><p>Arguments to be passed to gdxrrw::rgdx(...)</p></dd>
</dl></div>
<div id="value">
<h2>Value</h2>
<p>A dataframe</p>
<p>A dataframe</p>
</div>
<div id="see-also">
<h2>See also</h2>
<div class="dont-index"><p>*gdxrrw::rgdx.set()
*gdxrrw::rgdx.param()
*gdxrrw::rgdx.scalar()</p>
<p>*gdxrrw::rgdx.set()
*gdxrrw::rgdx.param()
*gdxrrw::rgdx.scalar()</p></div>
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<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1.0"><title>Reshape from wide to long and save to GDX — gdxreshape • FarmDynR</title><!-- jquery --><script src="https://cdnjs.cloudflare.com/ajax/libs/jquery/3.4.1/jquery.min.js" integrity="sha256-CSXorXvZcTkaix6Yvo6HppcZGetbYMGWSFlBw8HfCJo=" crossorigin="anonymous"></script><!-- Bootstrap --><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/3.4.1/css/bootstrap.min.css" integrity="sha256-bZLfwXAP04zRMK2BjiO8iu9pf4FbLqX6zitd+tIvLhE=" crossorigin="anonymous"><script src="https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/3.4.1/js/bootstrap.min.js" integrity="sha256-nuL8/2cJ5NDSSwnKD8VqreErSWHtnEP9E7AySL+1ev4=" crossorigin="anonymous"></script><!-- bootstrap-toc --><link rel="stylesheet" href="../bootstrap-toc.css"><script src="../bootstrap-toc.js"></script><!-- Font Awesome icons --><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/all.min.css" integrity="sha256-mmgLkCYLUQbXn0B1SRqzHar6dCnv9oZFPEC1g1cwlkk=" crossorigin="anonymous"><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/v4-shims.min.css" integrity="sha256-wZjR52fzng1pJHwx4aV2AO3yyTOXrcDW7jBpJtTwVxw=" crossorigin="anonymous"><!-- clipboard.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.6/clipboard.min.js" integrity="sha256-inc5kl9MA1hkeYUt+EC3BhlIgyp/2jDIyBLS6k3UxPI=" crossorigin="anonymous"></script><!-- headroom.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/headroom.min.js" integrity="sha256-AsUX4SJE1+yuDu5+mAVzJbuYNPHj/WroHuZ8Ir/CkE0=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/jQuery.headroom.min.js" integrity="sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4=" crossorigin="anonymous"></script><!-- pkgdown --><link href="../pkgdown.css" rel="stylesheet"><script src="../pkgdown.js"></script><meta property="og:title" content="Reshape from wide to long and save to GDX — gdxreshape"><meta property="og:description" content="`gdxreshape()` formats the data to be saved in GDX into long format. It is imported from the gdxrrw package with a few improvements for performance and usability, since there is a risk of it being removed from the gdxrrw package in the future.
We would like to thank the R GAMS team for this useful function.
`gdxreshape()` formats the data to be saved in GDX into long format. It is imported from the gdxrrw package with a few improvements for performance and usability, since there is a risk of it being removed from the gdxrrw package in the future.
We would like to thank the R GAMS team for this useful function."><!-- mathjax --><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity="sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin="anonymous"></script><!--[if lt IE 9]>
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<div class="page-header">
<h1>Reshape from wide to long and save to GDX</h1>
<div class="hidden name"><code>gdxreshape.Rd</code></div>
</div>
<div class="ref-description">
<p>`gdxreshape()` formats the data to be saved in GDX into long format. It is imported from the gdxrrw package with a few improvements for performance and usability, since there is a risk of it being removed from the gdxrrw package in the future.
We would like to thank the R GAMS team for this useful function.</p>
<p>`gdxreshape()` formats the data to be saved in GDX into long format. It is imported from the gdxrrw package with a few improvements for performance and usability, since there is a risk of it being removed from the gdxrrw package in the future.
We would like to thank the R GAMS team for this useful function.</p>
</div>
<div id="ref-usage">
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">gdxreshape</span><span class="op">(</span></span>
<span> <span class="va">inDF</span>,</span>
<span> <span class="va">symDim</span>,</span>
<span> symName <span class="op">=</span> <span class="cn">NULL</span>,</span>
<span> tName <span class="op">=</span> <span class="st">"time"</span>,</span>
<span> gdxName <span class="op">=</span> <span class="cn">NULL</span>,</span>
<span> setsToo <span class="op">=</span> <span class="cn">TRUE</span>,</span>
<span> order <span class="op">=</span> <span class="cn">NULL</span>,</span>
<span> setNames <span class="op">=</span> <span class="cn">NULL</span></span>
<span><span class="op">)</span></span>
<span></span>
<span><span class="fu">gdxreshape</span><span class="op">(</span></span>
<span> <span class="va">inDF</span>,</span>
<span> <span class="va">symDim</span>,</span>
<span> symName <span class="op">=</span> <span class="cn">NULL</span>,</span>
<span> tName <span class="op">=</span> <span class="st">"time"</span>,</span>
<span> gdxName <span class="op">=</span> <span class="cn">NULL</span>,</span>
<span> setsToo <span class="op">=</span> <span class="cn">TRUE</span>,</span>
<span> order <span class="op">=</span> <span class="cn">NULL</span>,</span>
<span> setNames <span class="op">=</span> <span class="cn">NULL</span></span>
<span><span class="op">)</span></span></code></pre></div>
</div>
<div id="arguments">
<h2>Arguments</h2>
<dl><dt>inDF</dt>
<dd><p>wide dataframe.</p></dd>
<dt>symDim</dt>
<dd><p>wide dataframe.</p></dd>
<dt>symName</dt>
<dd><p>wide dataframe.</p></dd>
<dt>tName</dt>
<dd><p>wide dataframe.</p></dd>
<dt>gdxName</dt>
<dd><p>wide dataframe.</p></dd>
<dt>setsToo</dt>
<dd><p>wide dataframe.</p></dd>
<dt>order</dt>
<dd><p>wide dataframe.</p></dd>
<dt>setNames</dt>
<dd><p>wide dataframe.</p></dd>
</dl></div>
<div id="value">
<h2>Value</h2>
<p>A tibble `tbl_df`.</p>
<p>A tibble `tbl_df`.</p>
</div>
<div id="see-also">
<h2>See also</h2>
<div class="dont-index">
<ul><li><p><code>wgdx]</code>Write R data to GDX</p></li>
<li><p><code>wgdx.lst]</code>Write multiple symbols to GDX</p></li>
<li><p><code>wgdx.reshape]</code>Write multiple symbols to GDX</p></li>
<li><p><code>pivot_longer]</code>Make dataframes longer</p></li>
</ul><ul><li><p><code>wgdx]</code>Write R data to GDX</p></li>
<li><p><code>wgdx.lst]</code>Write multiple symbols to GDX</p></li>
<li><p><code>wgdx.reshape]</code>Write multiple symbols to GDX</p></li>
<li><p><code>pivot_longer]</code>Make dataframes longer</p></li>
</ul></div>
</div>
<div id="ref-examples">
<h2>Examples</h2>
<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="va">BINDir</span> <span class="op">&lt;-</span> <span class="st">"inst/extdata/GAMS"</span></span></span>
<span class="r-in"><span><span class="va">datafile</span> <span class="op">&lt;-</span> <span class="st">'FarmDynRexampledata.gdx'</span></span></span>
<span class="r-in"><span><span class="fu"><a href="gdxbinwider.html">gdxbinwider</a></span><span class="op">(</span><span class="va">datafile</span>, <span class="va">BINDir</span>, <span class="st">'map2binid'</span>, <span class="st">'mapping'</span><span class="op">)</span></span></span>
<span class="r-err co"><span class="r-pr">#&gt;</span> <span class="error">Error in rgdx(gdxName, list(name = symName, compress = compress, ts = ts), squeeze = squeeze, useDomInfo = useDomInfo):</span> GDX file 'inst/extdata/GAMS/FarmDynRexampledata.gdx' not found</span>
<span class="r-in"><span><span class="va">BINDir</span> <span class="op">&lt;-</span> <span class="st">"inst/extdata/GAMS"</span></span></span>
<span class="r-in"><span><span class="va">datafile</span> <span class="op">&lt;-</span> <span class="st">'FarmDynRexampledata.gdx'</span></span></span>
<span class="r-in"><span><span class="fu"><a href="gdxbinwider.html">gdxbinwider</a></span><span class="op">(</span><span class="va">datafile</span>, <span class="va">BINDir</span>, <span class="st">'map2binid'</span>, <span class="st">'mapping'</span><span class="op">)</span></span></span>
<span class="r-err co"><span class="r-pr">#&gt;</span> <span class="error">Error in rgdx(gdxName, list(name = symName, compress = compress, ts = ts), squeeze = squeeze, useDomInfo = useDomInfo):</span> GDX file 'inst/extdata/GAMS/FarmDynRexampledata.gdx' not found</span>
</code></pre></div>
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