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<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1.0"><title>Generate descriptive statistics and save to GDX — groupstats • FarmDynR</title><!-- jquery --><script src="https://cdnjs.cloudflare.com/ajax/libs/jquery/3.4.1/jquery.min.js" integrity="sha256-CSXorXvZcTkaix6Yvo6HppcZGetbYMGWSFlBw8HfCJo=" crossorigin="anonymous"></script><!-- Bootstrap --><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/3.4.1/css/bootstrap.min.css" integrity="sha256-bZLfwXAP04zRMK2BjiO8iu9pf4FbLqX6zitd+tIvLhE=" crossorigin="anonymous"><script src="https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/3.4.1/js/bootstrap.min.js" integrity="sha256-nuL8/2cJ5NDSSwnKD8VqreErSWHtnEP9E7AySL+1ev4=" crossorigin="anonymous"></script><!-- bootstrap-toc --><link rel="stylesheet" href="../bootstrap-toc.css"><script src="../bootstrap-toc.js"></script><!-- Font Awesome icons --><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/all.min.css" integrity="sha256-mmgLkCYLUQbXn0B1SRqzHar6dCnv9oZFPEC1g1cwlkk=" crossorigin="anonymous"><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/v4-shims.min.css" integrity="sha256-wZjR52fzng1pJHwx4aV2AO3yyTOXrcDW7jBpJtTwVxw=" crossorigin="anonymous"><!-- clipboard.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.6/clipboard.min.js" integrity="sha256-inc5kl9MA1hkeYUt+EC3BhlIgyp/2jDIyBLS6k3UxPI=" crossorigin="anonymous"></script><!-- headroom.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/headroom.min.js" integrity="sha256-AsUX4SJE1+yuDu5+mAVzJbuYNPHj/WroHuZ8Ir/CkE0=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/jQuery.headroom.min.js" integrity="sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4=" crossorigin="anonymous"></script><!-- pkgdown --><link href="../pkgdown.css" rel="stylesheet"><script src="../pkgdown.js"></script><meta property="og:title" content="Generate descriptive statistics and save to GDX — groupstats"><meta property="og:description" content="`groupstats()` returns descriptive statistics per group based on the mapping given. For example, if your mapping
is 'regions', this function will give you the weighted mean, median, min, max, number of observations per variable for each
region based on the individual farm data. When `writegdx` is `TRUE`, it writes the GDX in the format 'farmStats_(mapping).gdx'
`groupstats()` returns descriptive statistics per group based on the mapping given. For example, if your mapping
is 'regions', this function will give you the weighted mean, median, min, max, number of observations per variable for each
region based on the individual farm data. When `writegdx` is `TRUE`, it writes the GDX in the format 'farmStats_(mapping).gdx'"><!-- mathjax --><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity="sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin="anonymous"></script><!--[if lt IE 9]>
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<h1>Generate descriptive statistics and save to GDX</h1>
<div class="hidden name"><code>groupstats.Rd</code></div>
</div>
<div class="ref-description">
<p>`groupstats()` returns descriptive statistics per group based on the mapping given. For example, if your mapping
is 'regions', this function will give you the weighted mean, median, min, max, number of observations per variable for each
region based on the individual farm data. When `writegdx` is `TRUE`, it writes the GDX in the format 'farmStats_(mapping).gdx'</p>
<p>`groupstats()` returns descriptive statistics per group based on the mapping given. For example, if your mapping
is 'regions', this function will give you the weighted mean, median, min, max, number of observations per variable for each
region based on the individual farm data. When `writegdx` is `TRUE`, it writes the GDX in the format 'farmStats_(mapping).gdx'</p>
</div>
<div id="ref-usage">
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">groupstats</span><span class="op">(</span></span>
<span> <span class="va">filename</span>,</span>
<span> <span class="va">BINDir</span>,</span>
<span> <span class="va">gdxmap</span>,</span>
<span> <span class="va">mapping</span>,</span>
<span> <span class="va">cols</span>,</span>
<span> <span class="va">w</span>,</span>
<span> writegdx <span class="op">=</span> <span class="cn">TRUE</span>,</span>
<span> filtern <span class="op">=</span> <span class="cn">FALSE</span></span>
<span><span class="op">)</span></span>
<span></span>
<span><span class="fu">groupstats</span><span class="op">(</span></span>
<span> <span class="va">filename</span>,</span>
<span> <span class="va">BINDir</span>,</span>
<span> <span class="va">gdxmap</span>,</span>
<span> <span class="va">mapping</span>,</span>
<span> <span class="va">cols</span>,</span>
<span> <span class="va">w</span>,</span>
<span> writegdx <span class="op">=</span> <span class="cn">TRUE</span>,</span>
<span> filtern <span class="op">=</span> <span class="cn">FALSE</span></span>
<span><span class="op">)</span></span></code></pre></div>
</div>
<div id="arguments">
<h2>Arguments</h2>
<dl><dt>filename</dt>
<dd><p>Name of the GDX file with BIN data and mappings.</p></dd>
<dt>BINDir</dt>
<dd><p>Directory where the FADN data is located.</p></dd>
<dt>gdxmap</dt>
<dd><p>Name of the set in the GDX file that contains the mapping (e.g. Regs2BINID)</p></dd>
<dt>mapping</dt>
<dd><p>Column name of the characteristic/variable to be grouped by (e.g. "Regions" or "Regs")</p></dd>
<dt>cols</dt>
<dd><p>Which columns to derive descriptive statistics from</p></dd>
<dt>w</dt>
<dd><p>Column with the Weights for the weighted mean</p></dd>
<dt>writegdx</dt>
<dd><p>Logical. If `TRUE`, it writes a GDX with the descriptive statistics.</p></dd>
<dt>filtern</dt>
<dd><p>Logical. If `TRUE`, results will be limited to more than 15 observations per variable for reporting</p></dd>
</dl></div>
<div id="value">
<h2>Value</h2>
<p>A tibble `tbl_df`.</p>
<p>A tibble `tbl_df`.</p>
</div>
<div id="see-also">
<h2>See also</h2>
<div class="dont-index">
<ul><li><p><code>summary]</code>summary statistics</p></li>
<li><p><code><a href="https://rdrr.io/pkg/psych/man/describe.html" class="external-link">describe</a></code>Descriptive statistics</p></li>
<li><p><code><a href="https://rdrr.io/pkg/gdxrrw/man/wgdx.html" class="external-link">wgdx</a></code>Write R data to GDX</p></li>
<li><p><code><a href="https://rdrr.io/pkg/gdxrrw/man/wgdx.html" class="external-link">wgdx.lst</a></code>Write multiple symbols to GDX</p></li>
<li><p><code><a href="https://tidyr.tidyverse.org/reference/pivot_longer.html" class="external-link">pivot_longer</a></code>Make dataframes longer</p></li>
</ul><ul><li><p><code>summary]</code>summary statistics</p></li>
<li><p><code><a href="https://rdrr.io/pkg/psych/man/describe.html" class="external-link">describe</a></code>Descriptive statistics</p></li>
<li><p><code><a href="https://rdrr.io/pkg/gdxrrw/man/wgdx.html" class="external-link">wgdx</a></code>Write R data to GDX</p></li>
<li><p><code><a href="https://rdrr.io/pkg/gdxrrw/man/wgdx.html" class="external-link">wgdx.lst</a></code>Write multiple symbols to GDX</p></li>
<li><p><code><a href="https://tidyr.tidyverse.org/reference/pivot_longer.html" class="external-link">pivot_longer</a></code>Make dataframes longer</p></li>
</ul></div>
</div>
<div id="ref-examples">
<h2>Examples</h2>
<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="va">BINDir</span> <span class="op">&lt;-</span> <span class="st">"inst/extdata/GAMS"</span></span></span>
<span class="r-in"><span><span class="va">datafile</span> <span class="op">&lt;-</span> <span class="st">'FarmDynRexampledata.gdx'</span></span></span>
<span class="r-in"><span><span class="fu">groupstats</span><span class="op">(</span><span class="st">'FarmDynRexampledata.gdx'</span>,</span></span>
<span class="r-in"><span> BINDir<span class="op">=</span><span class="st">"inst/extdata/GAMS/"</span>,</span></span>
<span class="r-in"><span> gdxmap <span class="op">=</span> <span class="st">'map2binid'</span>,</span></span>
<span class="r-in"><span> mapping <span class="op">=</span> <span class="st">'mapping'</span>,</span></span>
<span class="r-in"><span> cols <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">'a'</span>, <span class="st">'b'</span><span class="op">)</span>,</span></span>
<span class="r-in"><span> w<span class="op">=</span><span class="st">'Weight'</span><span class="op">)</span></span></span>
<span class="r-err co"><span class="r-pr">#&gt;</span> <span class="error">Error in rgdx(gdxName, list(name = symName, compress = compress, ts = ts), squeeze = squeeze, useDomInfo = useDomInfo):</span> GDX file 'inst/extdata/GAMS//FarmDynRexampledata.gdx' not found</span>
<span class="r-in"><span><span class="va">BINDir</span> <span class="op">&lt;-</span> <span class="st">"inst/extdata/GAMS"</span></span></span>
<span class="r-in"><span><span class="va">datafile</span> <span class="op">&lt;-</span> <span class="st">'FarmDynRexampledata.gdx'</span></span></span>
<span class="r-in"><span><span class="fu">groupstats</span><span class="op">(</span><span class="st">'FarmDynRexampledata.gdx'</span>,</span></span>
<span class="r-in"><span> BINDir<span class="op">=</span><span class="st">"inst/extdata/GAMS/"</span>,</span></span>
<span class="r-in"><span> gdxmap <span class="op">=</span> <span class="st">'map2binid'</span>,</span></span>
<span class="r-in"><span> mapping <span class="op">=</span> <span class="st">'mapping'</span>,</span></span>
<span class="r-in"><span> cols <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">'a'</span>, <span class="st">'b'</span><span class="op">)</span>,</span></span>
<span class="r-in"><span> w<span class="op">=</span><span class="st">'Weight'</span><span class="op">)</span></span></span>
<span class="r-err co"><span class="r-pr">#&gt;</span> <span class="error">Error in rgdx(gdxName, list(name = symName, compress = compress, ts = ts), squeeze = squeeze, useDomInfo = useDomInfo):</span> GDX file 'inst/extdata/GAMS//FarmDynRexampledata.gdx' not found</span>
</code></pre></div>
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<h1>Reference</h1>
</div>
<table class="ref-index"><colgroup><col class="alias"><col class="title"></colgroup><tbody><tr><th colspan="2">
<h2 id="all-functions">All functions <a href="#all-functions" class="anchor" aria-hidden="true"></a></h2>
<p class="section-desc"></p>
</th>
</tr></tbody><tbody><tr><td>
<p><code><a href="abs_diff.html">abs_diff()</a></code> </p>
</td>
<td><p>Calculates the absolute difference of the reference and the scenarios in a new column</p></td>
</tr><tr><td>
<p><code><a href="fadn2fd.html">fadn2fd()</a></code> </p>
</td>
<td><p>`fadn2fd()` imports the FADN data from the csv files</p></td>
</tr><tr><td>
<p><code><a href="fd_desc.html">fd_desc()</a></code> </p>
</td>
<td><p>`fd_desc()` calculates the descriptive statistics of the farm data</p></td>
</tr><tr><td>
<p><code><a href="first_match_col.html">first_match_col()</a></code> </p>
</td>
<td><p>`first_match_col()` finds the first matching column in a dataframe</p></td>
</tr><tr><td>
<p><code><a href="gdxbinwider.html">gdxbinwider()</a></code> <code><a href="gdxbinwider.html">gdxbinwider()</a></code> </p>
</td>
<td><p>Join BIN data together, make joined dataset wider, and group by a mapping</p></td>
</tr><tr><td>
<p><code><a href="gdxload.html">gdxload()</a></code> <code><a href="gdxload.html">gdxload()</a></code> </p>
</td>
<td><p>Load from GDX</p></td>
</tr><tr><td>
<p><code><a href="gdxreshape.html">gdxreshape()</a></code> <code><a href="gdxreshape.html">gdxreshape()</a></code> </p>
</td>
<td><p>Reshape from wide to long and save to GDX</p></td>
</tr><tr><td>
<p><code><a href="groupstats.html">groupstats()</a></code> <code><a href="groupstats.html">groupstats()</a></code> </p>
</td>
<td><p>Generate descriptive statistics and save to GDX</p></td>
</tr><tr><td>
<p><code><a href="is.nan.data.frame.html">is.nan(<i>&lt;data.frame&gt;</i>)</a></code> </p>
</td>
<td><p>`is.nan.data.frame()` checks if there are any NaNs in a dataframe (`is.nan()` does not work for dfs)</p></td>
</tr><tr><td>
<p><code><a href="load_dumps.html">load_dumps()</a></code> </p>
</td>
<td><p>`load_dumps()` loads the p_res from the dump gdx files</p></td>
</tr><tr><td>
<p><code><a href="load_dump_marg.html">load_dump_marg()</a></code> </p>
</td>
<td><p>`load_dump_marg()` loads any marginal from the dump gdx files</p></td>
</tr><tr><td>
<p><code><a href="load_dump_par.html">load_dump_par()</a></code> </p>
</td>
<td><p>`load_dump_par()` loads any parameter from the dump gdx files</p></td>
</tr><tr><td>
<p><code><a href="load_dump_scalar.html">load_dump_scalar()</a></code> </p>
</td>
<td><p>`load_dump_scalar()` loads any scalar from the dump gdx files</p></td>
</tr><tr><td>
<p><code><a href="Modes.html">Modes()</a></code> <code><a href="Modes.html">Modes()</a></code> </p>
</td>
<td><p>Retrieve mode of vector</p></td>
</tr><tr><td>
<p><code><a href="replace_first_match_col.html">replace_first_match_col()</a></code> </p>
</td>
<td><p>`replace_first_match_col()` replaces the name of the column in `first_match_col()` with what the user inputs</p></td>
</tr><tr><td>
<p><code><a href="rgdx.var.html">rgdx.var()</a></code> </p>
</td>
<td><p>Improved function to load variables from gdx files (from Renger in GAMSWorld forum)</p></td>
</tr><tr><td>
<p><code><a href="rm_lown.html">rm_lown()</a></code> </p>
</td>
<td><p>`rm_lown()` removes aggregated farms with less than 15 farms for reporting</p></td>
</tr><tr><td>
<p><code><a href="runFarmDynfromBatch.html">runFarmDynfromBatch()</a></code> <code><a href="runFarmDynfromBatch.html">runFarmDynfromBatch()</a></code> </p>
</td>
<td><p>Execute FarmDyn</p></td>
</tr><tr><td>
<p><code><a href="scen_analysis.html">scen_analysis()</a></code> </p>
</td>
<td><p>Data analysis function for repeated tasks
This loads p_res from different scenarios</p></td>
</tr><tr><td>
<p><code><a href="scen_diff.html">scen_diff()</a></code> </p>
</td>
<td><p>Calculates the relative difference of the reference and the scenarios in a new column</p></td>
</tr><tr><td>
<p><code><a href="str_line_replace.html">str_line_replace()</a></code> <code><a href="str_line_replace.html">str_firstLine_replace()</a></code> <code><a href="str_line_replace.html">str_lastLine_replace()</a></code> <code><a href="str_line_replace.html">str_line_replace()</a></code> <code><a href="str_line_replace.html">str_firstLine_replace()</a></code> <code><a href="str_line_replace.html">str_lastLine_replace()</a></code> </p>
</td>
<td><p>Replace first or last line in strings</p></td>
</tr><tr><td>
<p><code><a href="updateFarmData.html">updateFarmData()</a></code> <code><a href="updateFarmData.html">updateFarmData()</a></code> </p>
</td>
<td><p>Reshape from wide to long and save to GDX
Create sample farms</p></td>
</tr><tr><td>
<p><code><a href="vars_dump.html">vars_dump()</a></code> </p>
</td>
<td><p>Load variables from dump gdx files and return a data.table</p></td>
</tr><tr><td>
<p><code><a href="writeBatch.html">writeBatch()</a></code> <code><a href="writeBatch.html">writeBatch()</a></code> </p>
</td>
<td><p>Write batch file for batch file execution mode in FarmDyn</p></td>
</tr></tbody></table></div>
<div class="col-md-3 hidden-xs hidden-sm" id="pkgdown-sidebar">
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<h1>`is.nan.data.frame()` checks if there are any NaNs in a dataframe (`is.nan()` does not work for dfs)</h1>
<div class="hidden name"><code>is.nan.data.frame.Rd</code></div>
</div>
<div class="ref-description">
<p>`is.nan.data.frame()` checks if there are any NaNs in a dataframe (`is.nan()` does not work for dfs)</p>
</div>
<div id="ref-usage">
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="co"># S3 method for data.frame</span></span>
<span><span class="fu"><a href="https://rdrr.io/r/base/is.finite.html" class="external-link">is.nan</a></span><span class="op">(</span><span class="va">x</span><span class="op">)</span></span></code></pre></div>
</div>
<div id="arguments">
<h2>Arguments</h2>
<dl><dt>x</dt>
<dd><p>A dataframe</p></dd>
</dl></div>
<div id="value">
<h2>Value</h2>
<p>A dataframe with TRUE or FALSE for each column</p>
</div>
</div>
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<div class="col-md-9 contents">
<div class="page-header">
<h1>`load_dump_marg()` loads any marginal from the dump gdx files</h1>
<div class="hidden name"><code>load_dump_marg.Rd</code></div>
</div>
<div class="ref-description">
<p>`load_dump_marg()` loads any marginal from the dump gdx files</p>
</div>
<div id="ref-usage">
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">load_dump_marg</span><span class="op">(</span><span class="va">res_fold</span>, <span class="va">scen_name</span>, <span class="va">marginal</span><span class="op">)</span></span></code></pre></div>
</div>
<div id="arguments">
<h2>Arguments</h2>
<dl><dt>res_fold</dt>
<dd><p>Path to the folder where the gdx files are</p></dd>
<dt>scen_name</dt>
<dd><p>Name of the scenarios to load</p></dd>
<dt>marginal</dt>
<dd><p>Name of the marginal to load</p></dd>
</dl></div>
<div id="value">
<h2>Value</h2>
<p>A data.table with the marginal</p>
</div>
</div>
<div class="col-md-3 hidden-xs hidden-sm" id="pkgdown-sidebar">
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<div class="page-header">
<h1>`load_dump_par()` loads any parameter from the dump gdx files</h1>
<div class="hidden name"><code>load_dump_par.Rd</code></div>
</div>
<div class="ref-description">
<p>`load_dump_par()` loads any parameter from the dump gdx files</p>
</div>
<div id="ref-usage">
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">load_dump_par</span><span class="op">(</span><span class="va">res_fold</span>, <span class="va">scen_name</span>, <span class="va">param</span>, names <span class="op">=</span> <span class="cn">NULL</span><span class="op">)</span></span></code></pre></div>
</div>
<div id="arguments">
<h2>Arguments</h2>
<dl><dt>res_fold</dt>
<dd><p>Path to the folder where the gdx files are</p></dd>
<dt>scen_name</dt>
<dd><p>Name of the scenarios to load</p></dd>
<dt>param</dt>
<dd><p>Name of the parameter to load</p></dd>
<dt>names</dt>
<dd><p>Names of the columns to load</p></dd>
</dl></div>
<div id="value">
<h2>Value</h2>
<p>A data.table with the parameters</p>
</div>
</div>
<div class="col-md-3 hidden-xs hidden-sm" id="pkgdown-sidebar">
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<h1>`load_dump_scalar()` loads any scalar from the dump gdx files</h1>
<div class="hidden name"><code>load_dump_scalar.Rd</code></div>
</div>
<div class="ref-description">
<p>`load_dump_scalar()` loads any scalar from the dump gdx files</p>
</div>
<div id="ref-usage">
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">load_dump_scalar</span><span class="op">(</span><span class="va">res_fold</span>, <span class="va">scen_name</span>, <span class="va">scalar</span><span class="op">)</span></span></code></pre></div>
</div>
<div id="arguments">
<h2>Arguments</h2>
<dl><dt>res_fold</dt>
<dd><p>Path to the folder where the gdx files are</p></dd>
<dt>scen_name</dt>
<dd><p>Name of the scenarios to load</p></dd>
<dt>scalar</dt>
<dd><p>Name of the scalar to load</p></dd>
</dl></div>
<div id="value">
<h2>Value</h2>
<p>A data.table with the scalar</p>
</div>
<div id="ref-examples">
<h2>Examples</h2>
<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu">load_dump_scalar</span><span class="op">(</span>res_fold <span class="op">=</span> <span class="va">res_fold</span>, scen_name <span class="op">=</span> <span class="va">scen_name</span>, scalar <span class="op">=</span> <span class="st">"p_Nmin"</span><span class="op">)</span></span></span>
<span class="r-err co"><span class="r-pr">#&gt;</span> <span class="error">Error in eval(expr, envir, enclos):</span> object 'res_fold' not found</span>
</code></pre></div>
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<h1>`load_dumps()` loads the p_res from the dump gdx files</h1>
<div class="hidden name"><code>load_dumps.Rd</code></div>
</div>
<div class="ref-description">
<p>`load_dumps()` loads the p_res from the dump gdx files</p>
</div>
<div id="ref-usage">
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">load_dumps</span><span class="op">(</span><span class="va">res_fold</span>, <span class="va">scen_name</span><span class="op">)</span></span></code></pre></div>
</div>
<div id="arguments">
<h2>Arguments</h2>
<dl><dt>res_fold</dt>
<dd><p>Path to the folder where the gdx files are</p></dd>
<dt>scen_name</dt>
<dd><p>Name of the scenarios to load</p></dd>
</dl></div>
<div id="value">
<h2>Value</h2>
<p>A data.table with the parameters</p>
</div>
</div>
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<div class="page-header">
<h1>Pipe operator</h1>
<div class="hidden name"><code>pipe.Rd</code></div>
</div>
<div class="ref-description">
<p>See <code>magrittr::%&gt;%</code> for details.</p>
</div>
<div id="ref-usage">
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="va">lhs</span> <span class="op">%&gt;%</span> <span class="va">rhs</span></span></code></pre></div>
</div>
<div id="arguments">
<h2>Arguments</h2>
<dl><dt>lhs</dt>
<dd><p>A value or the magrittr placeholder.</p></dd>
<dt>rhs</dt>
<dd><p>A function call using the magrittr semantics.</p></dd>
</dl></div>
<div id="value">
<h2>Value</h2>
<p>The result of calling `rhs(lhs)`.</p>
</div>
</div>
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<h1>`replace_first_match_col()` replaces the name of the column in `first_match_col()` with what the user inputs</h1>
<div class="hidden name"><code>replace_first_match_col.Rd</code></div>
</div>
<div class="ref-description">
<p>`replace_first_match_col()` replaces the name of the column in `first_match_col()` with what the user inputs</p>
</div>
<div id="ref-usage">
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">replace_first_match_col</span><span class="op">(</span><span class="va">x</span>, <span class="va">pattern</span>, how <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"all"</span>, <span class="st">"any"</span><span class="op">)</span>, <span class="va">replace_with</span><span class="op">)</span></span></code></pre></div>
</div>
<div id="arguments">
<h2>Arguments</h2>
<dl><dt>x</dt>
<dd><p>A dataframe</p></dd>
<dt>pattern</dt>
<dd><p>A pattern to match</p></dd>
<dt>how</dt>
<dd><p>How to match the pattern (all or any)</p></dd>
<dt>replace_with</dt>
<dd><p>The name to replace the column name with</p></dd>
</dl></div>
<div id="value">
<h2>Value</h2>
<p>dataframe with the replaced column name</p>
</div>
<div id="ref-examples">
<h2>Examples</h2>
<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="va">data</span> <span class="op">&lt;-</span> <span class="fu"><a href="https://rdrr.io/r/base/data.frame.html" class="external-link">data.frame</a></span><span class="op">(</span>a <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"a"</span>, <span class="st">"b"</span>, <span class="st">"c"</span><span class="op">)</span>, b <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"a"</span>, <span class="st">" "</span>, <span class="st">"c"</span><span class="op">)</span>, c <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"a"</span>, <span class="st">"b"</span>, <span class="st">"1"</span><span class="op">)</span><span class="op">)</span></span></span>
<span class="r-in"><span><span class="fu">replace_first_match_col</span><span class="op">(</span><span class="va">data</span>, <span class="st">"\\D"</span>, <span class="st">"all"</span>, <span class="st">"new"</span><span class="op">)</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> new b c</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 1 a a a</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 2 b b</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 3 c c 1</span>
<span class="r-in"><span><span class="fu">replace_first_match_col</span><span class="op">(</span><span class="va">data</span>, <span class="st">"\\d"</span>, <span class="st">"any"</span>, <span class="st">"new"</span><span class="op">)</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> a b new</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 1 a a a</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 2 b b</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 3 c c 1</span>
</code></pre></div>
</div>
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<h1>Improved function to load variables from gdx files (from Renger in GAMSWorld forum)</h1>
<div class="hidden name"><code>rgdx.var.Rd</code></div>
</div>
<div class="ref-description">
<p>Improved function to load variables from gdx files (from Renger in GAMSWorld forum)</p>
</div>
<div id="ref-usage">
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">rgdx.var</span><span class="op">(</span><span class="va">varname</span>, <span class="va">scen_name</span>, <span class="va">res_fold</span><span class="op">)</span></span></code></pre></div>
</div>
<div id="arguments">
<h2>Arguments</h2>
<dl><dt>varname</dt>
<dd><p>Name of the variable to load</p></dd>
<dt>scen_name</dt>
<dd><p>Name of the scenarios to load</p></dd>
<dt>res_fold</dt>
<dd><p>Path to the folder where the gdx files are</p></dd>
</dl></div>
<div id="value">
<h2>Value</h2>
<p>A data.table with the variable</p>
</div>
<div id="references">
<h2>References</h2>
<p>https://forum.gamsworld.org/viewtopic.php?t=9966</p>
</div>
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<h1>`rm_lown()` removes aggregated farms with less than 15 farms for reporting</h1>
<div class="hidden name"><code>rm_lown.Rd</code></div>
</div>
<div class="ref-description">
<p>`rm_lown()` removes aggregated farms with less than 15 farms for reporting</p>
</div>
<div id="ref-usage">
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">rm_lown</span><span class="op">(</span><span class="va">data</span>, <span class="va">farm_data</span><span class="op">)</span></span></code></pre></div>
</div>
<div id="arguments">
<h2>Arguments</h2>
<dl><dt>data</dt>
<dd><p>A dataframe with the data to plot</p></dd>
<dt>farm_data</dt>
<dd><p>A dataframe with the farm data</p></dd>
</dl></div>
<div id="value">
<h2>Value</h2>
<p>A dataframe with the data without the aggregated farms</p>
</div>
</div>
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<h1>Execute FarmDyn</h1>
<div class="hidden name"><code>runFarmDynfromBatch.Rd</code></div>
</div>
<div class="ref-description">
<p>`runFarmDynfromBatch()` does as it says in the function.</p>
<p>`runFarmDynfromBatch()` does as it says in the function.</p>
</div>
<div id="ref-usage">
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">runFarmDynfromBatch</span><span class="op">(</span><span class="va">FarmDynDir</span>, <span class="va">IniFile</span>, <span class="va">XMLFile</span>, <span class="va">BATCHDir</span>, <span class="va">BATCHFile</span><span class="op">)</span></span>
<span></span>
<span><span class="fu">runFarmDynfromBatch</span><span class="op">(</span><span class="va">FarmDynDir</span>, <span class="va">IniFile</span>, <span class="va">XMLFile</span>, <span class="va">BATCHDir</span>, <span class="va">BATCHFile</span><span class="op">)</span></span></code></pre></div>
</div>
<div id="arguments">
<h2>Arguments</h2>
<dl><dt>FarmDynDir</dt>
<dd><p>Directory where FarmDyn is located</p></dd>
<dt>IniFile</dt>
<dd><p>Name of the IniFile</p></dd>
<dt>XMLFile</dt>
<dd><p>Name of the XML file</p></dd>
<dt>BATCHDir</dt>
<dd><p>Directory where the .batch file is located</p></dd>
<dt>BATCHFile</dt>
<dd><p>Name of the .batch file</p></dd>
</dl></div>
<div id="value">
<h2>Value</h2>
<p>Executes FarmDyn from R</p>
<p>Executes FarmDyn from R</p>
</div>
<div id="see-also">
<h2>See also</h2>
<div class="dont-index"><p>*Globiom?</p>
<p>*Globiom?</p></div>
</div>
<div id="ref-examples">
<h2>Examples</h2>
</div>
</div>
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This loads p_res from different scenarios — scen_analysis"><meta property="og:description" content="Data analysis function for repeated tasks
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<h1>Data analysis function for repeated tasks
This loads p_res from different scenarios</h1>
<div class="hidden name"><code>scen_analysis.Rd</code></div>
</div>
<div class="ref-description">
<p>Data analysis function for repeated tasks
This loads p_res from different scenarios</p>
</div>
<div id="ref-usage">
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">scen_analysis</span><span class="op">(</span><span class="va">res_fold</span>, <span class="va">scen_name</span><span class="op">)</span></span></code></pre></div>
</div>
<div id="arguments">
<h2>Arguments</h2>
<dl><dt>res_fold</dt>
<dd><p>Path to the folder where the gdx files are</p></dd>
<dt>scen_name</dt>
<dd><p>Name of the scenarios to load</p></dd>
</dl></div>
<div id="value">
<h2>Value</h2>
<p>A data.table with the parameters</p>
</div>
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<h1>Calculates the relative difference of the reference and the scenarios in a new column</h1>
<div class="hidden name"><code>scen_diff.Rd</code></div>
</div>
<div class="ref-description">
<p>Calculates the relative difference of the reference and the scenarios in a new column</p>
</div>
<div id="ref-usage">
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">scen_diff</span><span class="op">(</span><span class="va">data</span>, <span class="va">vars_to_diff</span><span class="op">)</span></span></code></pre></div>
</div>
<div id="arguments">
<h2>Arguments</h2>
<dl><dt>data</dt>
<dd><p>A dataframe</p></dd>
<dt>vars_to_diff</dt>
<dd><p>A vector with the names of the variables to calculate the difference</p></dd>
</dl></div>
<div id="value">
<h2>Value</h2>
<p>A dataframe with the new columns</p>
</div>
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<!DOCTYPE html>
<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1.0"><title>Replace first or last line in strings — str_line_replace • FarmDynR</title><!-- jquery --><script src="https://cdnjs.cloudflare.com/ajax/libs/jquery/3.4.1/jquery.min.js" integrity="sha256-CSXorXvZcTkaix6Yvo6HppcZGetbYMGWSFlBw8HfCJo=" crossorigin="anonymous"></script><!-- Bootstrap --><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/3.4.1/css/bootstrap.min.css" integrity="sha256-bZLfwXAP04zRMK2BjiO8iu9pf4FbLqX6zitd+tIvLhE=" crossorigin="anonymous"><script src="https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/3.4.1/js/bootstrap.min.js" integrity="sha256-nuL8/2cJ5NDSSwnKD8VqreErSWHtnEP9E7AySL+1ev4=" crossorigin="anonymous"></script><!-- bootstrap-toc --><link rel="stylesheet" href="../bootstrap-toc.css"><script src="../bootstrap-toc.js"></script><!-- Font Awesome icons --><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/all.min.css" integrity="sha256-mmgLkCYLUQbXn0B1SRqzHar6dCnv9oZFPEC1g1cwlkk=" crossorigin="anonymous"><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/v4-shims.min.css" integrity="sha256-wZjR52fzng1pJHwx4aV2AO3yyTOXrcDW7jBpJtTwVxw=" crossorigin="anonymous"><!-- clipboard.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.6/clipboard.min.js" integrity="sha256-inc5kl9MA1hkeYUt+EC3BhlIgyp/2jDIyBLS6k3UxPI=" crossorigin="anonymous"></script><!-- headroom.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/headroom.min.js" integrity="sha256-AsUX4SJE1+yuDu5+mAVzJbuYNPHj/WroHuZ8Ir/CkE0=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/jQuery.headroom.min.js" integrity="sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4=" crossorigin="anonymous"></script><!-- pkgdown --><link href="../pkgdown.css" rel="stylesheet"><script src="../pkgdown.js"></script><meta property="og:title" content="Replace first or last line in strings — str_line_replace"><meta property="og:description" content="These functions serve to change the first or last line of strings which match a specific pattern (regex).
`str_firstLine_replace()` replaces the first line that matches the pattern.
`str_lastLine_replace()` replaces the last line that matches the pattern
They are useful, for example, when reading a text file with many lines and you want to preserve the lines of that text file.
When `which='all'`, it is a wrapper for `stringr::str_replace()`.
These functions serve to change the first or last line of strings which match a specific pattern (regex).
`str_firstLine_replace()` replaces the first line that matches the pattern.
`str_lastLine_replace()` replaces the last line that matches the pattern
They are useful, for example, when reading a text file with many lines and you want to preserve the lines of that text file.
When `which='all'`, it is a wrapper for `stringr::str_replace()`."><!-- mathjax --><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity="sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin="anonymous"></script><!--[if lt IE 9]>
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<h1>Replace first or last line in strings</h1>
<div class="hidden name"><code>str_line_replace.Rd</code></div>
</div>
<div class="ref-description">
<p>These functions serve to change the first or last line of strings which match a specific pattern (regex).
`str_firstLine_replace()` replaces the first line that matches the pattern.
`str_lastLine_replace()` replaces the last line that matches the pattern
They are useful, for example, when reading a text file with many lines and you want to preserve the lines of that text file.
When `which='all'`, it is a wrapper for `stringr::str_replace()`.</p>
<p>These functions serve to change the first or last line of strings which match a specific pattern (regex).
`str_firstLine_replace()` replaces the first line that matches the pattern.
`str_lastLine_replace()` replaces the last line that matches the pattern
They are useful, for example, when reading a text file with many lines and you want to preserve the lines of that text file.
When `which='all'`, it is a wrapper for `stringr::str_replace()`.</p>
</div>
<div id="ref-usage">
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">str_line_replace</span><span class="op">(</span></span>
<span> <span class="va">str</span>,</span>
<span> <span class="va">pattern</span>,</span>
<span> <span class="va">replacement</span>,</span>
<span> which <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"first"</span>, <span class="st">"last"</span>, <span class="st">"poles"</span>, <span class="st">"all"</span><span class="op">)</span></span>
<span><span class="op">)</span></span>
<span></span>
<span><span class="fu">str_firstLine_replace</span><span class="op">(</span><span class="va">str</span>, <span class="va">pattern</span>, <span class="va">replacement</span><span class="op">)</span></span>
<span></span>
<span><span class="fu">str_lastLine_replace</span><span class="op">(</span><span class="va">str</span>, <span class="va">pattern</span>, <span class="va">replacement</span><span class="op">)</span></span>
<span></span>
<span><span class="fu">str_line_replace</span><span class="op">(</span></span>
<span> <span class="va">str</span>,</span>
<span> <span class="va">pattern</span>,</span>
<span> <span class="va">replacement</span>,</span>
<span> which <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"first"</span>, <span class="st">"last"</span>, <span class="st">"poles"</span>, <span class="st">"all"</span><span class="op">)</span></span>
<span><span class="op">)</span></span>
<span></span>
<span><span class="fu">str_firstLine_replace</span><span class="op">(</span><span class="va">str</span>, <span class="va">pattern</span>, <span class="va">replacement</span><span class="op">)</span></span>
<span></span>
<span><span class="fu">str_lastLine_replace</span><span class="op">(</span><span class="va">str</span>, <span class="va">pattern</span>, <span class="va">replacement</span><span class="op">)</span></span></code></pre></div>
</div>
<div id="arguments">
<h2>Arguments</h2>
<dl><dt>str</dt>
<dd><p>String with pattern to make replacement</p></dd>
<dt>pattern</dt>
<dd><p>Regular expression to replace</p></dd>
<dt>replacement</dt>
<dd><p>What to replace the pattern with</p></dd>
<dt>which</dt>
<dd><p>which one? first, last, all or the poles (first AND last)</p></dd>
</dl></div>
<div id="value">
<h2>Value</h2>
<p>string</p>
<p>string</p>
</div>
<div id="see-also">
<h2>See also</h2>
<div class="dont-index"><p>[stringr::str_replace()]</p>
<p>[stringr::str_replace()]</p></div>
</div>
<div id="ref-examples">
<h2>Examples</h2>
<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span></span></span>
<span class="r-in"><span><span class="va">somelines</span> <span class="op">&lt;-</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">'AAAAA'</span>, <span class="st">'textytext'</span>, <span class="st">'BBBBB'</span>, <span class="st">'AAAAA'</span>, <span class="st">'writingwriting'</span>, <span class="st">'AAAAA'</span>, <span class="st">'etc'</span>, <span class="st">'etc'</span>, <span class="st">'BBBBB'</span><span class="op">)</span></span></span>
<span class="r-in"><span></span></span>
<span class="r-in"><span><span class="fu">str_firstLine_replace</span><span class="op">(</span><span class="va">somelines</span>, <span class="st">'AAAAA'</span>, <span class="st">'changedfirstline'</span><span class="op">)</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] "changedfirstline" "textytext" "BBBBB" "AAAAA" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [5] "writingwriting" "AAAAA" "etc" "etc" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [9] "BBBBB" </span>
<span class="r-in"><span></span></span>
<span class="r-in"><span><span class="fu">str_lastLine_replace</span><span class="op">(</span><span class="va">somelines</span>, <span class="st">'AAAAA'</span>, <span class="st">'changedlastline'</span><span class="op">)</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] "AAAAA" "textytext" "BBBBB" "AAAAA" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [5] "writingwriting" "changedlastline" "etc" "etc" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [9] "BBBBB" </span>
<span class="r-in"><span></span></span>
<span class="r-in"><span><span class="fu">str_line_replace</span><span class="op">(</span><span class="va">somelines</span>, <span class="st">'AAAAA'</span>, <span class="st">'changedpoles'</span>, which<span class="op">=</span><span class="st">'poles'</span><span class="op">)</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] "changedpoles" "textytext" "BBBBB" "AAAAA" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [5] "writingwriting" "changedpoles" "etc" "etc" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [9] "BBBBB" </span>
<span class="r-in"><span></span></span>
<span class="r-in"><span><span class="fu">str_line_replace</span><span class="op">(</span><span class="va">somelines</span>, <span class="st">'AAAAA'</span>, <span class="st">'changedall'</span>, which<span class="op">=</span><span class="st">'all'</span><span class="op">)</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] "changedall" "textytext" "BBBBB" "changedall" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [5] "writingwriting" "changedall" "etc" "etc" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [9] "BBBBB" </span>
<span class="r-in"><span></span></span>
<span class="r-in"><span></span></span>
<span class="r-in"><span><span class="va">somelines</span> <span class="op">&lt;-</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">'AAAAA'</span>, <span class="st">'textytext'</span>, <span class="st">'BBBBB'</span>, <span class="st">'AAAAA'</span>, <span class="st">'writingwriting'</span>, <span class="st">'AAAAA'</span>, <span class="st">'etc'</span>, <span class="st">'etc'</span>, <span class="st">'BBBBB'</span><span class="op">)</span></span></span>
<span class="r-in"><span></span></span>
<span class="r-in"><span><span class="fu">str_firstLine_replace</span><span class="op">(</span><span class="va">somelines</span>, <span class="st">'AAAAA'</span>, <span class="st">'changedfirstline'</span><span class="op">)</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] "changedfirstline" "textytext" "BBBBB" "AAAAA" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [5] "writingwriting" "AAAAA" "etc" "etc" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [9] "BBBBB" </span>
<span class="r-in"><span></span></span>
<span class="r-in"><span><span class="fu">str_lastLine_replace</span><span class="op">(</span><span class="va">somelines</span>, <span class="st">'AAAAA'</span>, <span class="st">'changedlastline'</span><span class="op">)</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] "AAAAA" "textytext" "BBBBB" "AAAAA" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [5] "writingwriting" "changedlastline" "etc" "etc" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [9] "BBBBB" </span>
<span class="r-in"><span></span></span>
<span class="r-in"><span><span class="fu">str_line_replace</span><span class="op">(</span><span class="va">somelines</span>, <span class="st">'AAAAA'</span>, <span class="st">'changedpoles'</span>, which<span class="op">=</span><span class="st">'poles'</span><span class="op">)</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] "changedpoles" "textytext" "BBBBB" "AAAAA" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [5] "writingwriting" "changedpoles" "etc" "etc" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [9] "BBBBB" </span>
<span class="r-in"><span></span></span>
<span class="r-in"><span><span class="fu">str_line_replace</span><span class="op">(</span><span class="va">somelines</span>, <span class="st">'AAAAA'</span>, <span class="st">'changedall'</span>, which<span class="op">=</span><span class="st">'all'</span><span class="op">)</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] "changedall" "textytext" "BBBBB" "changedall" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [5] "writingwriting" "changedall" "etc" "etc" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [9] "BBBBB" </span>
<span class="r-in"><span></span></span>
</code></pre></div>
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docs/reference/updateFarmData.html 0 → 100644
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<!DOCTYPE html>
<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1.0"><title>Reshape from wide to long and save to GDX
Create sample farms — updateFarmData • FarmDynR</title><!-- jquery --><script src="https://cdnjs.cloudflare.com/ajax/libs/jquery/3.4.1/jquery.min.js" integrity="sha256-CSXorXvZcTkaix6Yvo6HppcZGetbYMGWSFlBw8HfCJo=" crossorigin="anonymous"></script><!-- Bootstrap --><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/3.4.1/css/bootstrap.min.css" integrity="sha256-bZLfwXAP04zRMK2BjiO8iu9pf4FbLqX6zitd+tIvLhE=" crossorigin="anonymous"><script src="https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/3.4.1/js/bootstrap.min.js" integrity="sha256-nuL8/2cJ5NDSSwnKD8VqreErSWHtnEP9E7AySL+1ev4=" crossorigin="anonymous"></script><!-- bootstrap-toc --><link rel="stylesheet" href="../bootstrap-toc.css"><script src="../bootstrap-toc.js"></script><!-- Font Awesome icons --><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/all.min.css" integrity="sha256-mmgLkCYLUQbXn0B1SRqzHar6dCnv9oZFPEC1g1cwlkk=" crossorigin="anonymous"><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/v4-shims.min.css" integrity="sha256-wZjR52fzng1pJHwx4aV2AO3yyTOXrcDW7jBpJtTwVxw=" crossorigin="anonymous"><!-- clipboard.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.6/clipboard.min.js" integrity="sha256-inc5kl9MA1hkeYUt+EC3BhlIgyp/2jDIyBLS6k3UxPI=" crossorigin="anonymous"></script><!-- headroom.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/headroom.min.js" integrity="sha256-AsUX4SJE1+yuDu5+mAVzJbuYNPHj/WroHuZ8Ir/CkE0=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/jQuery.headroom.min.js" integrity="sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4=" crossorigin="anonymous"></script><!-- pkgdown --><link href="../pkgdown.css" rel="stylesheet"><script src="../pkgdown.js"></script><meta property="og:title" content="Reshape from wide to long and save to GDX
Create sample farms — updateFarmData"><meta property="og:description" content="`updateFarmData()` creates sample farms by aggregating data based on the weighted mean and the selected mapping for use in FarmDyn.
For non-numerical globals, it summarises based on the mode using the `Modes()` function. When `writegdx` is `TRUE`, it writes the GDX in the format 'farmData_(mapping).gdx'.
`updateFarmData()` creates sample farms by aggregating data based on the weighted mean and the selected mapping for use in FarmDyn.
For non-numerical globals, it summarises based on the mode using the `Modes()` function. When `writegdx` is `TRUE`, it writes the GDX in the format 'farmData_(mapping).gdx'."><!-- mathjax --><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity="sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin="anonymous"></script><!--[if lt IE 9]>
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<h1>Reshape from wide to long and save to GDX
Create sample farms</h1>
<div class="hidden name"><code>updateFarmData.Rd</code></div>
</div>
<div class="ref-description">
<p>`updateFarmData()` creates sample farms by aggregating data based on the weighted mean and the selected mapping for use in FarmDyn.
For non-numerical globals, it summarises based on the mode using the `Modes()` function. When `writegdx` is `TRUE`, it writes the GDX in the format 'farmData_(mapping).gdx'.</p>
<p>`updateFarmData()` creates sample farms by aggregating data based on the weighted mean and the selected mapping for use in FarmDyn.
For non-numerical globals, it summarises based on the mode using the `Modes()` function. When `writegdx` is `TRUE`, it writes the GDX in the format 'farmData_(mapping).gdx'.</p>
</div>
<div id="ref-usage">
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">updateFarmData</span><span class="op">(</span></span>
<span> <span class="va">filename</span>,</span>
<span> <span class="va">BINDir</span>,</span>
<span> <span class="va">gdxmap</span>,</span>
<span> <span class="va">mapping</span>,</span>
<span> writegdx <span class="op">=</span> <span class="cn">TRUE</span>,</span>
<span> cptcoeffs <span class="op">=</span> <span class="cn">FALSE</span>,</span>
<span> farmchars <span class="op">=</span> <span class="cn">NULL</span>,</span>
<span> cptcoeffsxl <span class="op">=</span> <span class="cn">NULL</span></span>
<span><span class="op">)</span></span>
<span></span>
<span><span class="fu">updateFarmData</span><span class="op">(</span></span>
<span> <span class="va">filename</span>,</span>
<span> <span class="va">BINDir</span>,</span>
<span> <span class="va">gdxmap</span>,</span>
<span> <span class="va">mapping</span>,</span>
<span> writegdx <span class="op">=</span> <span class="cn">TRUE</span>,</span>
<span> cptcoeffs <span class="op">=</span> <span class="cn">FALSE</span>,</span>
<span> farmchars <span class="op">=</span> <span class="cn">NULL</span>,</span>
<span> cptcoeffsxl <span class="op">=</span> <span class="cn">NULL</span></span>
<span><span class="op">)</span></span></code></pre></div>
</div>
<div id="arguments">
<h2>Arguments</h2>
<dl><dt>filename</dt>
<dd><p>Name of the GDX file with BIN data and mappings.</p></dd>
<dt>BINDir</dt>
<dd><p>Directory where the FADN data is located.</p></dd>
<dt>gdxmap</dt>
<dd><p>Name of the set in the GDX file that contains the mapping (e.g. Regs2BINID)</p></dd>
<dt>mapping</dt>
<dd><p>Column name of the characteristic/variable to be grouped by (e.g. "Regions" or "Regs")</p></dd>
<dt>writegdx</dt>
<dd><p>Logical. If `TRUE`, it writes a GDX with the descriptive statistics.</p></dd>
<dt>cptcoeffs</dt>
<dd><p>Logical. When this is set to `TRUE` it calculates farm-specific parameters based on CPT coefficients</p></dd>
<dt>farmchars</dt>
<dd><p>GDX file containing farm characteristics</p></dd>
<dt>cptcoeffsxl</dt>
<dd><p>Location of the CPT coefficients excel file</p></dd>
</dl></div>
<div id="value">
<h2>Value</h2>
<p>A tibble `tbl_df`.</p>
<p>A tibble `tbl_df`.</p>
</div>
<div id="see-also">
<h2>See also</h2>
<div class="dont-index">
<ul><li><p><code><a href="gdxbinwider.html">gdxbinwider</a></code>Widens BIN data directly from GDX</p></li>
<li><p><code><a href="gdxreshape.html">gdxreshape</a></code>Lengthens data and saves to GDX</p></li>
<li><p><code><a href="https://rdrr.io/pkg/gdxrrw/man/wgdx.html" class="external-link">wgdx</a></code>Write R data to GDX</p></li>
<li><p><code><a href="https://rdrr.io/pkg/gdxrrw/man/wgdx.html" class="external-link">wgdx.lst</a></code>Write multiple symbols to GDX</p></li>
<li><p><code><a href="https://dplyr.tidyverse.org/reference/summarise.html" class="external-link">summarise</a></code>Make dataframes longer</p></li>
<li><p><code>weighted.mean]</code>Calculates weighted mean</p></li>
</ul><ul><li><p><code><a href="gdxbinwider.html">gdxbinwider</a></code>Widens BIN data directly from GDX</p></li>
<li><p><code><a href="gdxreshape.html">gdxreshape</a></code>Lengthens data and saves to GDX</p></li>
<li><p><code><a href="https://rdrr.io/pkg/gdxrrw/man/wgdx.html" class="external-link">wgdx</a></code>Write R data to GDX</p></li>
<li><p><code><a href="https://rdrr.io/pkg/gdxrrw/man/wgdx.html" class="external-link">wgdx.lst</a></code>Write multiple symbols to GDX</p></li>
<li><p><code><a href="https://dplyr.tidyverse.org/reference/summarise.html" class="external-link">summarise</a></code>Make dataframes longer</p></li>
<li><p><code>weighted.mean]</code>Calculates weighted mean</p></li>
</ul></div>
</div>
<div id="ref-examples">
<h2>Examples</h2>
</div>
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<h1>Load variables from dump gdx files and return a data.table</h1>
<div class="hidden name"><code>vars_dump.Rd</code></div>
</div>
<div class="ref-description">
<p>Load variables from dump gdx files and return a data.table</p>
</div>
<div id="ref-usage">
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">vars_dump</span><span class="op">(</span><span class="va">res_fold</span>, <span class="va">varname</span>, <span class="va">scen_name</span><span class="op">)</span></span></code></pre></div>
</div>
<div id="arguments">
<h2>Arguments</h2>
<dl><dt>res_fold</dt>
<dd><p>Path to the folder where the gdx files are</p></dd>
<dt>varname</dt>
<dd><p>Name of the variable to load</p></dd>
<dt>scen_name</dt>
<dd><p>Name of the scenarios to load</p></dd>
</dl></div>
<div id="value">
<h2>Value</h2>
<p>A data.table with the variable</p>
</div>
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docs/reference/writeBatch.html 0 → 100644
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<!DOCTYPE html>
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settings remain the same as you have set them.
This function writes the batch file for you. It directly takes the necessary information from runInc.gms in FarmDyn, so the GUI
settings remain the same as you have set them."><!-- mathjax --><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity="sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin="anonymous"></script><!--[if lt IE 9]>
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<a class="navbar-link" href="../index.html">FarmDynR</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="">0.2.0</span>
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<h1>Write batch file for batch file execution mode in FarmDyn</h1>
<div class="hidden name"><code>writeBatch.Rd</code></div>
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<div class="ref-description">
<p>This function writes the batch file for you. It directly takes the necessary information from runInc.gms in FarmDyn, so the GUI
settings remain the same as you have set them.</p>
<p>This function writes the batch file for you. It directly takes the necessary information from runInc.gms in FarmDyn, so the GUI
settings remain the same as you have set them.</p>
</div>
<div id="ref-usage">
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">writeBatch</span><span class="op">(</span><span class="va">FarmDynDir</span>, <span class="va">mapping</span>, <span class="va">farmIds</span><span class="op">)</span></span>
<span></span>
<span><span class="fu">writeBatch</span><span class="op">(</span><span class="va">FarmDynDir</span>, <span class="va">mapping</span>, <span class="va">farmIds</span><span class="op">)</span></span></code></pre></div>
</div>
<div id="arguments">
<h2>Arguments</h2>
<dl><dt>FarmDynDir</dt>
<dd><p>Directory where FarmDyn is located</p></dd>
<dt>mapping</dt>
<dd><p>Column name of the characteristic/variable to be grouped by (e.g. "Regions" or "Regs")</p></dd>
</dl></div>
<div id="value">
<h2>Value</h2>
<p>Writes batch file necessary to run FarmDyn</p>
<p>Writes batch file necessary to run FarmDyn</p>
</div>
<div id="see-also">
<h2>See also</h2>
<div class="dont-index"><p><code><a href="runFarmDynfromBatch.html">runFarmDynfromBatch</a></code></p>
<p><code><a href="runFarmDynfromBatch.html">runFarmDynfromBatch</a></code></p></div>
</div>
<div id="ref-examples">
<h2>Examples</h2>
</div>
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<p></p><p>Developed by Hugo Scherer.</p>
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docs/sitemap.xml 0 → 100644
View file @ db427ff3
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<loc>/reference/vars_dump.html</loc>
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<loc>/reference/writeBatch.html</loc>
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farmData_ABNRegs.gsp 0 → 100644
View file @ db427ff3
{
"name": "farmData_ABNRegs",
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"file": "farmData_ABNRegs.gdx",
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